Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0266300-01 | |
| Os03t0266900-02 | |
| Os03t0267000-00 | |
| Os03t0267200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59720.1 | Os03t0266300-01 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0266900-02 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0267000-00 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0267200-01 | AT5G59720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0267000-00 | Rice | cytosol, plastid | 94.81 | 90.68 |
| Os03t0267200-01 | Rice | cytosol, plastid | 92.86 | 89.94 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 91.56 | 87.58 |
| Zm00001d028557_P001 | Maize | mitochondrion | 88.31 | 86.08 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 88.31 | 86.08 |
| KXG39718 | Sorghum | cytosol | 87.66 | 85.99 |
| EER95124 | Sorghum | cytosol | 87.01 | 84.81 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 85.71 | 83.54 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 86.36 | 82.61 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 84.42 | 82.28 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 84.42 | 82.28 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 83.12 | 81.53 |
| Zm00001d047841_P001 | Maize | cytosol | 83.77 | 79.14 |
| Os01t0136200-01 | Rice | cytosol, plastid | 74.68 | 76.67 |
| Os01t0136000-00 | Rice | cytosol | 74.03 | 76.51 |
| Os01t0136100-01 | Rice | cytosol, nucleus, plastid | 74.03 | 76.0 |
| CDY60563 | Canola | cytosol | 71.43 | 72.37 |
| Bra020295.1-P | Field mustard | cytosol | 71.43 | 72.37 |
| CDY56096 | Canola | cytosol | 70.13 | 71.05 |
| Bra006697.1-P | Field mustard | cytosol | 70.13 | 71.05 |
| AT5G59720.1 | Thale cress | cytosol | 74.03 | 70.81 |
| AT1G53540.1 | Thale cress | cytosol | 72.08 | 70.7 |
| CDX88719 | Canola | cytosol | 72.73 | 70.0 |
| CDX71079 | Canola | cytosol | 72.73 | 70.0 |
| AT3G46230.1 | Thale cress | cytosol | 70.78 | 69.87 |
| CDX99119 | Canola | cytosol | 70.13 | 68.79 |
| CDX86069 | Canola | cytosol | 70.13 | 68.79 |
| Bra002539.1-P | Field mustard | plastid | 71.43 | 68.75 |
| Bra018216.1-P | Field mustard | cytosol | 69.48 | 68.15 |
| CDY49575 | Canola | plastid | 69.48 | 66.88 |
| Os01t0135800-01 | Rice | cytosol | 51.3 | 52.67 |
| Os06t0253100-01 | Rice | mitochondrion | 38.96 | 41.1 |
| Os01t0135900-02 | Rice | plasma membrane | 43.51 | 40.36 |
| Os02t0128000-00 | Rice | cytosol | 40.26 | 35.03 |
| Os04t0445100-01 | Rice | nucleus, plastid | 42.86 | 30.7 |
| Os11t0244200-01 | Rice | endoplasmic reticulum | 38.96 | 29.13 |
Protein Annotations
| MapMan:19.1.8.1 | Gene3D:2.60.40.790 | EntrezGene:4332360 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AAC78392.1 | ProteinID:AAP06882.1 |
| ProteinID:ABF95155.1 | EMBL:AK119243 | EMBL:AK119717 | ProteinID:BAF11574.1 | ProteinID:BAS83420.1 | EMBL:D12635 |
| ProteinID:EAZ26378.1 | EMBL:EU846992 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0042542 | GO:GO:0045471 |
| GO:GO:0046685 | GO:GO:0046686 | GO:GO:0046688 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | EMBL:M80186 | EnsemblPlantsGene:Os03g0266900 | EnsemblPlants:Os03t0266900-02 | UniProt:P31673 | PFAM:PF00011 |
| PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | SUPFAM:SSF49764 | UniParc:UPI000009F1AF | RefSeq:XP_015631117.1 |
| SEG:seg | : | : | : | : | : |
Description
17.3 KDA CLASS I HEAT SHOCK PROTEINLow molecular mass heat shock protein Oshsp17.3. (Os03t0266900-02)
Coordinates
chr3:-:8833718..8834470
Molecular Weight (calculated)
17375.6 Da
IEP (calculated)
6.559
GRAVY (calculated)
-0.706
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMIRRSNVF DPFSLDLWDP FDGFPFGSGS GSLFPRANSD AAAFAGARID WKETPEAHVF KADVPGLKKE EVKVEVEDGN VLQISGERIK EQEEKTDKWH
101: RVERSSGKFL RRFRLPENTK PEQIKASMEN GVLTVTVPKE EPKKPDVKSI QITG
101: RVERSSGKFL RRFRLPENTK PEQIKASMEN GVLTVTVPKE EPKKPDVKSI QITG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.