Factsheet for Zm00001d028555_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028555_P001
Zm00001d028557_P001
Zm00001d028561_P001
Zm00001d047841_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	Zm00001d028555_P001	AT5G59720.1	21798944
AT5G59720.1	Zm00001d028557_P001	AT5G59720.1	21798944
AT5G59720.1	Zm00001d028561_P001	AT5G59720.1	21798944
AT5G59720.1	Zm00001d047841_P001	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028557_P001	Maize	mitochondrion	99.37	99.37
EER95124	Sorghum	cytosol	96.84	96.84
TraesCS4A01G092200.1	Wheat	cytosol	87.34	91.39
TraesCS4D01G213100.1	Wheat	cytosol	90.51	91.08
TraesCS4A01G092900.1	Wheat	cytosol	90.51	90.51
TraesCS4D01G213300.1	Wheat	cytosol	89.24	89.81
Os03t0266300-01	Rice	nucleus, plasma membrane	91.14	89.44
TraesCS4D01G212200.1	Wheat	cytosol	91.14	89.44
TraesCS4A01G092100.1	Wheat	cytosol	89.24	89.24
TraesCS4B01G212200.1	Wheat	cytosol	88.61	89.17
TraesCS4B01G212300.1	Wheat	cytosol	87.34	89.03
Os03t0267000-00	Rice	cytosol, plastid	90.51	88.82
HORVU4Hr1G060720.2	Barley	cytosol	88.61	88.61
TraesCS4D01G212300.1	Wheat	cytosol	87.97	88.53
Os03t0266900-02	Rice	cytosol	86.08	88.31
TraesCS4A01G092800.1	Wheat	cytosol	87.97	87.97
TraesCS4B01G211600.1	Wheat	cytosol	87.34	87.9
TraesCS4D01G212400.1	Wheat	cytosol	87.34	87.34
Zm00001d047841_P001	Maize	cytosol	87.97	85.28
Zm00001d028561_P001	Maize	cytosol	85.44	84.91
Os03t0267200-01	Rice	cytosol, plastid	82.91	82.39
Zm00001d039936_P001	Maize	cytosol	71.52	74.34
Zm00001d039933_P001	Maize	plasma membrane	72.15	74.03
Bra020295.1-P	Field mustard	cytosol	70.25	73.03
CDY60563	Canola	cytosol	70.25	73.03
CDY56096	Canola	cytosol	69.62	72.37
Zm00001d008577_P001	Maize	cytosol	70.89	72.26
Bra002539.1-P	Field mustard	plastid	72.78	71.88
Bra006697.1-P	Field mustard	cytosol	68.99	71.71
AT5G59720.1	Thale cress	cytosol	72.78	71.43
CDX88719	Canola	cytosol	72.15	71.25
AT3G46230.1	Thale cress	cytosol	70.25	71.15
AT1G53540.1	Thale cress	cytosol	70.25	70.7
CDX71079	Canola	cytosol	71.52	70.62
CDX86069	Canola	cytosol	69.62	70.06
Bra018216.1-P	Field mustard	cytosol	69.62	70.06
CDY49575	Canola	plastid	70.89	70.0
CDX99119	Canola	cytosol	68.99	69.43
Zm00001d039942_P001	Maize	cytosol	50.63	53.69
Zm00001d044728_P001	Maize	mitochondrion	37.97	41.1
Zm00001d039941_P001	Maize	cytosol	41.14	39.16
Zm00001d007271_P001	Maize	cytosol, endoplasmic reticulum	45.57	38.5
Zm00001d053965_P001	Maize	mitochondrion, plastid	41.77	35.87
Zm00001d003554_P001	Maize	endoplasmic reticulum, golgi	44.3	33.65
Zm00001d025508_P001	Maize	extracellular	43.67	31.8

Protein Annotations

EMBL:EU962980	EnsemblPlants:Zm00001d028555_P001	EnsemblPlants:Zm00001d028555_T001	EnsemblPlantsGene:Zm00001d028555	EntrezGene:100274593	Gene3D:2.60.40.790
InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF240	PFAM:PF00011	PFscan:PS01031	ProteinID:ONL96363.1	SEG:seg	SUPFAM:SSF49764
UniParc:UPI0000E64A62	UniProt:B6TDB5	MapMan:19.1.8.1	:	:	:

Description

17.4 kDa class I heat shock protein 3

Coordinates

chr1:+:38997819..38998295

Molecular Weight (calculated)

17786.8 Da

IEP (calculated)

5.390

GRAVY (calculated)

-0.668

Length

158 amino acids

Sequence
(BLAST)

001: MSLIRRSNVF DPFSLDLWDP FEGFPFGSGN SSSLFPSFPR TSSETAAFAG ARIDWKETPE AHVFKADVPG LKKEEVKVEV EDGNVLQISG ERNKEQEEKT
101: DTWHRVERSS GRFLRRFRLP ENAKTEQITA AMENGVLTVT VPKEDAKKPE VKSIQISG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.