Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02531 | Sorghum | cytosol | 87.66 | 88.82 |
| EES00358 | Sorghum | cytosol | 85.71 | 87.42 |
| Zm00001d039936_P001 | Maize | cytosol | 83.77 | 84.87 |
| Zm00001d008577_P001 | Maize | cytosol | 83.12 | 82.58 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 74.03 | 72.15 |
| Zm00001d028557_P001 | Maize | mitochondrion | 74.03 | 72.15 |
| Zm00001d028561_P001 | Maize | cytosol | 68.18 | 66.04 |
| Zm00001d047841_P001 | Maize | cytosol | 69.48 | 65.64 |
| Zm00001d039942_P001 | Maize | cytosol | 51.3 | 53.02 |
| Zm00001d039941_P001 | Maize | cytosol | 43.51 | 40.36 |
| Zm00001d044728_P001 | Maize | mitochondrion | 36.36 | 38.36 |
| Zm00001d007271_P001 | Maize | cytosol, endoplasmic reticulum | 46.1 | 37.97 |
| Zm00001d053965_P001 | Maize | mitochondrion, plastid | 44.81 | 37.5 |
| Zm00001d003554_P001 | Maize | endoplasmic reticulum, golgi | 42.86 | 31.73 |
| Zm00001d025508_P001 | Maize | extracellular | 42.21 | 29.95 |
Protein Annotations
| EMBL:EU952685 | EnsemblPlants:Zm00001d039933_P001 | EnsemblPlants:Zm00001d039933_T001 | EnsemblPlantsGene:Zm00001d039933 | EntrezGene:100280576 | Gene3D:2.60.40.790 |
| InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF241 | PFAM:PF00011 | PFscan:PS01031 | ProteinID:ONM30193.1 | SEG:seg | SUPFAM:SSF49764 |
| UniParc:UPI000182AE04 | UniProt:B6SIX0 | MapMan:19.1.8.1 | : | : | : |
Description
16.9 kDa class I heat shock protein 1
Coordinates
chr3:-:19846081..19846545
Molecular Weight (calculated)
17059.1 Da
IEP (calculated)
7.704
GRAVY (calculated)
-0.451
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVRRGSVF DPFSVDLFDP FDSVFRSIVP SSSSAAAASE TAAFASARID WKETPEAHVF KADLPGVKKE EVKVEVEDGN VLLISGQRSR EKEDKGDKWH
101: RVERSSGQFV RRFRLPENAK TEEVRAALEN GVLTVTVPKA EVKKPEVKSI QISG
101: RVERSSGQFV RRFRLPENAK TEEVRAALEN GVLTVTVPKA EVKKPEVKSI QISG
001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
Arabidopsis Description
HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.