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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d028555_P001
Zm00001d028557_P001
Zm00001d028561_P001
Zm00001d047841_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G59720.1 Zm00001d028555_P001 AT5G59720.1 21798944
AT5G59720.1 Zm00001d028557_P001 AT5G59720.1 21798944
AT5G59720.1 Zm00001d028561_P001 AT5G59720.1 21798944
AT5G59720.1 Zm00001d047841_P001 AT5G59720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028555_P001 Maize extracellular, plasma membrane 99.37 99.37
EER95124 Sorghum cytosol 96.84 96.84
TraesCS4A01G092200.1 Wheat cytosol 86.71 90.73
TraesCS4A01G092900.1 Wheat cytosol 90.51 90.51
TraesCS4D01G213100.1 Wheat cytosol 89.87 90.45
Os03t0266300-01 Rice nucleus, plasma membrane 91.77 90.06
TraesCS4B01G212200.1 Wheat cytosol 89.24 89.81
TraesCS4D01G212200.1 Wheat cytosol 91.14 89.44
TraesCS4D01G213300.1 Wheat cytosol 88.61 89.17
TraesCS4D01G212300.1 Wheat cytosol 88.61 89.17
TraesCS4B01G212300.1 Wheat cytosol 87.34 89.03
Os03t0267000-00 Rice cytosol, plastid 90.51 88.82
TraesCS4A01G092100.1 Wheat cytosol 88.61 88.61
TraesCS4B01G211600.1 Wheat cytosol 87.97 88.53
Os03t0266900-02 Rice cytosol 86.08 88.31
HORVU4Hr1G060720.2 Barley cytosol 87.97 87.97
TraesCS4A01G092800.1 Wheat cytosol 87.97 87.97
TraesCS4D01G212400.1 Wheat cytosol 87.34 87.34
Zm00001d047841_P001 Maize cytosol 88.61 85.89
Zm00001d028561_P001 Maize cytosol 85.44 84.91
Os03t0267200-01 Rice cytosol, plastid 83.54 83.02
Zm00001d039936_P001 Maize cytosol 71.52 74.34
Zm00001d039933_P001 Maize plasma membrane 72.15 74.03
CDY60563 Canola cytosol 70.25 73.03
Bra020295.1-P Field mustard cytosol 70.25 73.03
CDY56096 Canola cytosol 69.62 72.37
Zm00001d008577_P001 Maize cytosol 70.89 72.26
Bra002539.1-P Field mustard plastid 72.78 71.88
Bra006697.1-P Field mustard cytosol 68.99 71.71
AT5G59720.1 Thale cress cytosol 72.78 71.43
CDX88719 Canola cytosol 72.15 71.25
AT3G46230.1 Thale cress cytosol 70.25 71.15
AT1G53540.1 Thale cress cytosol 70.25 70.7
CDX71079 Canola cytosol 71.52 70.62
CDX86069 Canola cytosol 69.62 70.06
Bra018216.1-P Field mustard cytosol 69.62 70.06
CDY49575 Canola plastid 70.89 70.0
CDX99119 Canola cytosol 68.99 69.43
Zm00001d039942_P001 Maize cytosol 50.63 53.69
Zm00001d044728_P001 Maize mitochondrion 37.97 41.1
Zm00001d039941_P001 Maize cytosol 41.14 39.16
Zm00001d007271_P001 Maize cytosol, endoplasmic reticulum 45.57 38.5
Zm00001d053965_P001 Maize mitochondrion, plastid 41.77 35.87
Zm00001d003554_P001 Maize endoplasmic reticulum, golgi 44.3 33.65
Zm00001d025508_P001 Maize extracellular 43.67 31.8
Protein Annotations
EnsemblPlants:Zm00001d028557_P001EnsemblPlants:Zm00001d028557_T001EnsemblPlantsGene:Zm00001d028557EntrezGene:103634220Gene3D:2.60.40.790InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20InterPro:HSP20-like_chaperoneInterPro:IPR002068InterPro:IPR008978PANTHER:PTHR11527PANTHER:PTHR11527:SF240
PFAM:PF00011PFscan:PS01031ProteinID:ONL96365.1SEG:segSUPFAM:SSF49764UniParc:UPI0001D62DF5
UniProt:A0A1D6JXF4MapMan:19.1.8.1::::
Description
17.4 kDa class I heat shock protein
Coordinates
chr1:+:39085728..39086204
Molecular Weight (calculated)
17759.8 Da
IEP (calculated)
5.390
GRAVY (calculated)
-0.651
Length
158 amino acids
Sequence
(BLAST)
001: MSLIRRSNVF DPFSLDLWDP FEGFPFGSGS SSSLFPSFPR TSSETAAFAG ARIDWKETPE AHVFKADVPG LKKEEVKVEV EDGNVLQISG ERNKEQEEKT
101: DTWHRVERSS GRFLRRFRLP ENAKTEQITA AMENGVLTVT VPKEDAKKPE VKSIQISG
Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.