Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59720.1 | CDX71079 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDX88719 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDY49575 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDY56096 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDY60563 | AT5G59720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60563 | Canola | cytosol | 96.71 | 96.71 |
| CDX88719 | Canola | cytosol | 94.08 | 89.38 |
| CDX71079 | Canola | cytosol | 92.11 | 87.5 |
| AT5G59720.1 | Thale cress | cytosol | 90.13 | 85.09 |
| CDY49575 | Canola | plastid | 88.82 | 84.38 |
| CDX86069 | Canola | cytosol | 82.89 | 80.25 |
| CDX99119 | Canola | cytosol | 82.24 | 79.62 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 74.34 | 74.83 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 75.0 | 72.61 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 74.34 | 71.97 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 73.03 | 71.61 |
| TraesCS4D01G212300.1 | Wheat | cytosol | 73.68 | 71.34 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 73.68 | 70.89 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 73.03 | 70.7 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 73.03 | 70.25 |
| EER95124 | Sorghum | cytosol | 73.03 | 70.25 |
| Os03t0266900-02 | Rice | cytosol | 71.05 | 70.13 |
| CDY51363 | Canola | cytosol | 69.74 | 69.74 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 72.37 | 69.62 |
| Zm00001d028557_P001 | Maize | mitochondrion | 72.37 | 69.62 |
| CDX97881 | Canola | cytosol | 69.08 | 68.63 |
| CDY53371 | Canola | cytosol | 69.74 | 67.95 |
| CDY45448 | Canola | cytosol | 69.74 | 67.95 |
| EER95120 | Sorghum | cytosol | 70.39 | 67.72 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 71.71 | 67.7 |
| TraesCS4D01G212500.1 | Wheat | cytosol | 68.42 | 67.1 |
| Os03t0267000-00 | Rice | cytosol, plastid | 71.05 | 67.08 |
| KXG39718 | Sorghum | cytosol | 69.08 | 66.88 |
| Os03t0267200-01 | Rice | cytosol, plastid | 69.74 | 66.67 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 69.08 | 66.46 |
| TraesCS4A01G092700.1 | Wheat | cytosol | 67.76 | 66.45 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 69.74 | 65.84 |
| TraesCS4A01G092600.1 | Wheat | cytosol | 67.11 | 65.81 |
| Zm00001d028561_P001 | Maize | cytosol | 67.76 | 64.78 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 63.82 | 64.67 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 67.11 | 64.56 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 67.11 | 64.56 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 66.45 | 64.33 |
| CDY53372 | Canola | cytosol, plastid | 65.13 | 63.87 |
| CDY45447 | Canola | cytosol | 65.79 | 62.89 |
| Zm00001d047841_P001 | Maize | cytosol | 67.11 | 62.58 |
| CDY60723 | Canola | cytosol | 38.82 | 42.45 |
| CDY01718 | Canola | cytosol | 37.5 | 41.01 |
| CDX93767 | Canola | endoplasmic reticulum, extracellular, golgi | 43.42 | 38.37 |
| CDX86006 | Canola | extracellular | 42.11 | 37.21 |
| CDY05088 | Canola | cytosol | 46.71 | 36.04 |
| CDX90748 | Canola | extracellular | 46.05 | 35.53 |
| CDY68135 | Canola | cytosol | 34.21 | 33.55 |
Protein Annotations
| EnsemblPlants:CDY56096 | EnsemblPlantsGene:GSBRNA2T00017811001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF241 | PFAM:PF00011 | PFscan:PS01031 |
| ProteinID:CDY56096 | ProteinID:CDY56096.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI0004EE3BE1 | UniProt:A0A078IZU4 |
| MapMan:19.1.8.1 | : | : | : | : | : |
Description
BnaC02g44300DBnaC02g44300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZU4]
Coordinates
chrLK033457:-:2675..3133
Molecular Weight (calculated)
17127.3 Da
IEP (calculated)
5.878
GRAVY (calculated)
-0.701
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVPSLVGG RRSNVFDPFS LDAWDPFEGL LTPSSARDMA AFTNARVDWK ETPEAHVFKA DLPGLKKEEV KVEVEDKNIL QISGERSKEN EDKNDNWHRV
101: ERASGKFMRR FKLPENAKME EVKATMENGV LTVTVPKAPE KKPEVKSIDI SG
101: ERASGKFMRR FKLPENAKME EVKATMENGV LTVTVPKAPE KKPEVKSIDI SG
001: MSLIPSIFGG RRSNVFDPFS QDLWDPFEGF FTPSSALANA STARDVAAFT NARVDWKETP EAHVFKADLP GLKKEEVKVE VEDKNVLQIS GERSKENEEK
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N
Arabidopsis Description
HSP18.118.1 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19037]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.