Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G212500.1 | Wheat | cytosol | 95.48 | 95.48 |
| TraesCS4A01G092600.1 | Wheat | cytosol | 94.19 | 94.19 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 88.39 | 91.33 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 82.58 | 84.77 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 85.16 | 83.54 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 85.16 | 83.54 |
| EER95120 | Sorghum | cytosol | 84.52 | 82.91 |
| Zm00001d028561_P001 | Maize | cytosol | 83.87 | 81.76 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 82.58 | 81.01 |
| TraesCS3A01G034500.1 | Wheat | cytosol | 69.03 | 70.86 |
| TraesCS3A01G034000.1 | Wheat | cytosol | 68.39 | 70.2 |
| TraesCS3A01G033900.1 | Wheat | cytosol | 68.39 | 70.2 |
| Bra020295.1-P | Field mustard | cytosol | 66.45 | 67.76 |
| CDY56096 | Canola | cytosol | 66.45 | 67.76 |
| CDY60563 | Canola | cytosol | 66.45 | 67.76 |
| AT3G46230.1 | Thale cress | cytosol | 67.1 | 66.67 |
| AT5G59720.1 | Thale cress | cytosol | 69.03 | 66.46 |
| Bra006697.1-P | Field mustard | cytosol | 65.16 | 66.45 |
| CDX88719 | Canola | cytosol | 67.74 | 65.62 |
| CDX71079 | Canola | cytosol | 67.74 | 65.62 |
| Bra002539.1-P | Field mustard | plastid | 67.1 | 65.0 |
| Bra018216.1-P | Field mustard | cytosol | 65.81 | 64.97 |
| AT1G53540.1 | Thale cress | cytosol | 65.81 | 64.97 |
| CDX86069 | Canola | cytosol | 65.81 | 64.97 |
| CDY49575 | Canola | plastid | 66.45 | 64.38 |
| CDX99119 | Canola | cytosol | 65.16 | 64.33 |
| TraesCS7A01G183800.1 | Wheat | cytosol | 47.1 | 47.1 |
| TraesCS3A01G035400.1 | Wheat | cytosol | 42.58 | 40.0 |
| TraesCS7A01G202200.1 | Wheat | mitochondrion, peroxisome | 35.48 | 39.86 |
| TraesCS6A01G087600.1 | Wheat | cytosol | 41.29 | 34.59 |
| TraesCS3A01G035500.1 | Wheat | mitochondrion, plastid | 43.23 | 32.21 |
| TraesCS2A01G312900.1 | Wheat | endoplasmic reticulum, golgi | 42.58 | 30.14 |
| TraesCS4A01G226700.1 | Wheat | plastid | 38.06 | 23.79 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G092700.1 | EnsemblPlantsGene:TraesCS4A01G092700 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06472 | MapMan:19.1.8.1 | : | : |
Description
No Description!
Coordinates
chr4A:-:100102028..100102737
Molecular Weight (calculated)
17264.4 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.593
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRGDVF DPFSLDLWDP FDGFPFGSGS GSIFPRTTSS DTAAFAGARI DWKEMPEAHV FKADVPGLKK EEVKVEVDDG NVLQISGERN KEQEQKTGTW
101: HRVERSSGKF LRRFRLPDNV KSEEIKAAME NGVLTVTVPK AEAKKPDVKP VQITG
101: HRVERSSGKF LRRFRLPDNV KSEEIKAAME NGVLTVTVPK AEAKKPDVKP VQITG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.