Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018216.1-P | Field mustard | cytosol | 96.18 | 96.18 |
| CDX99119 | Canola | cytosol | 95.54 | 95.54 |
| AT3G46230.1 | Thale cress | cytosol | 88.53 | 89.1 |
| AT1G53540.1 | Thale cress | cytosol | 87.9 | 87.9 |
| CDY60563 | Canola | cytosol | 82.17 | 84.87 |
| CDY56096 | Canola | cytosol | 80.25 | 82.89 |
| CDX88719 | Canola | cytosol | 83.44 | 81.88 |
| CDX71079 | Canola | cytosol | 82.8 | 81.25 |
| CDY49575 | Canola | plastid | 80.89 | 79.38 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 71.97 | 74.83 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 73.25 | 73.25 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 72.61 | 72.61 |
| TraesCS4D01G212300.1 | Wheat | cytosol | 71.97 | 71.97 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 71.97 | 71.97 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 70.7 | 71.61 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 71.97 | 71.52 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 71.34 | 70.89 |
| EER95124 | Sorghum | cytosol | 70.7 | 70.25 |
| Os03t0266900-02 | Rice | cytosol | 68.79 | 70.13 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 70.06 | 69.62 |
| Zm00001d028557_P001 | Maize | mitochondrion | 70.06 | 69.62 |
| EER95120 | Sorghum | cytosol | 68.79 | 68.35 |
| Os03t0267000-00 | Rice | cytosol, plastid | 70.06 | 68.32 |
| CDX97881 | Canola | cytosol | 66.24 | 67.97 |
| Os03t0267200-01 | Rice | cytosol, plastid | 68.79 | 67.92 |
| CDY51363 | Canola | cytosol | 65.61 | 67.76 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 69.43 | 67.7 |
| KXG39718 | Sorghum | cytosol | 67.52 | 67.52 |
| CDY45448 | Canola | cytosol | 66.88 | 67.31 |
| TraesCS4D01G212500.1 | Wheat | cytosol | 66.24 | 67.1 |
| CDY53371 | Canola | cytosol | 66.24 | 66.67 |
| Zm00001d028561_P001 | Maize | cytosol | 66.88 | 66.04 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 66.24 | 65.82 |
| TraesCS4A01G092600.1 | Wheat | cytosol | 64.97 | 65.81 |
| TraesCS4A01G092700.1 | Wheat | cytosol | 64.97 | 65.81 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 66.88 | 65.22 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 65.61 | 65.19 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 65.61 | 65.19 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 64.97 | 64.97 |
| Zm00001d047841_P001 | Maize | cytosol | 66.88 | 64.42 |
| CDY53372 | Canola | cytosol, plastid | 63.06 | 63.87 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 60.51 | 63.33 |
| CDY45447 | Canola | cytosol | 63.06 | 62.26 |
| CDY60723 | Canola | cytosol | 37.58 | 42.45 |
| CDY01718 | Canola | cytosol | 36.31 | 41.01 |
| CDX93767 | Canola | endoplasmic reticulum, extracellular, golgi | 38.85 | 35.47 |
| CDX86006 | Canola | extracellular | 38.22 | 34.88 |
| CDY68135 | Canola | cytosol | 33.12 | 33.55 |
| CDY05088 | Canola | cytosol | 41.4 | 32.99 |
| CDX90748 | Canola | extracellular | 40.76 | 32.49 |
Protein Annotations
| EnsemblPlants:CDX86069 | EnsemblPlantsGene:GSBRNA2T00144045001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF241 | PFAM:PF00011 | PFscan:PS01031 |
| ProteinID:CDX86069 | ProteinID:CDX86069.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI0004EE2DCD | MapMan:19.1.8.1 |
Description
BnaC03g55840D
Coordinates
chrLK031844:-:886043..886594
Molecular Weight (calculated)
17757.9 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.721
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIPSFFGG RRTNVFDPFS LDLYDPFEGF STPSGMTNTT SKDVAAFTNA KVDWRETPEA HVFKADLPGL KKEEVKVEVE DGNILQISGE RSSENEEKND
101: KWHRVERSSG KFMRRFKLRE NAKVEEVKAS MENGVLSVTV PKMPERKPEV KSIDISG
101: KWHRVERSSG KFMRRFKLRE NAKVEEVKAS MENGVLSVTV PKMPERKPEV KSIDISG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.