Factsheet for HORVU4Hr1G060720.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G060720.2
HORVU4Hr1G060760.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	HORVU4Hr1G060720.2	AT5G59720.1	21798944
AT5G59720.1	HORVU4Hr1G060760.1	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G092100.1	Wheat	cytosol	98.1	98.1
TraesCS4A01G092200.1	Wheat	cytosol	93.67	98.01
TraesCS4D01G213100.1	Wheat	cytosol	96.84	97.45
TraesCS4D01G213300.1	Wheat	cytosol	95.57	96.18
TraesCS4B01G212200.1	Wheat	cytosol	93.67	94.27
TraesCS4D01G212300.1	Wheat	cytosol	93.04	93.63
TraesCS4B01G212300.1	Wheat	cytosol	91.77	93.55
Zm00001d028555_P001	Maize	extracellular, plasma membrane	88.61	88.61
Zm00001d028557_P001	Maize	mitochondrion	87.97	87.97
EER95124	Sorghum	cytosol	87.97	87.97
Os03t0266300-01	Rice	nucleus, plasma membrane	88.61	86.96
KXG39718	Sorghum	cytosol	84.81	85.35
HORVU4Hr1G060760.1	Barley	cytosol	77.85	82.0
Zm00001d047841_P001	Maize	cytosol	82.91	80.37
CDY60563	Canola	cytosol	70.89	73.68
Bra020295.1-P	Field mustard	cytosol	70.89	73.68
CDY56096	Canola	cytosol	70.25	73.03
AT3G46230.1	Thale cress	cytosol	71.52	72.44
Bra006697.1-P	Field mustard	cytosol	69.62	72.37
AT1G53540.1	Thale cress	cytosol	71.52	71.97
CDX71079	Canola	cytosol	72.78	71.88
CDX88719	Canola	cytosol	72.78	71.88
CDX86069	Canola	cytosol	70.89	71.34
Bra018216.1-P	Field mustard	cytosol	70.25	70.7
CDX99119	Canola	cytosol	70.25	70.7
Bra002539.1-P	Field mustard	plastid	71.52	70.62
AT5G59720.1	Thale cress	cytosol	71.52	70.19
CDY49575	Canola	plastid	69.62	68.75
HORVU3Hr1G007380.1	Barley	mitochondrion	70.89	57.44
HORVU3Hr1G006530.1	Barley	cytosol	70.89	53.33
HORVU3Hr1G007500.4	Barley	cytosol, plastid	70.89	51.85
HORVU2Hr1G120170.1	Barley	cytosol	68.99	43.95
HORVU3Hr1G006930.1	Barley	cytosol	41.14	39.39
HORVU6Hr1G015130.1	Barley	cytosol	43.04	38.42
HORVU0Hr1G020420.1	Barley	plastid	36.71	33.92
HORVU2Hr1G077710.2	Barley	endoplasmic reticulum, golgi	42.41	29.26
HORVU4Hr1G015170.1	Barley	cytosol, endoplasmic reticulum	42.41	27.92
HORVU3Hr1G006940.2	Barley	cytosol	38.61	25.1

Protein Annotations

MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	EMBL:AK375479	UniProt:F2EH52	GO:GO:0006950
GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0042542	GO:GO:0045471	GO:GO:0046685
GO:GO:0046686	GO:GO:0046688	EnsemblPlantsGene:HORVU4Hr1G060720	EnsemblPlants:HORVU4Hr1G060720.2	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF240
SUPFAM:SSF49764	UniParc:UPI0002008B6C	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EH52]

Coordinates

chrchr4H:-:509850028..509850516

Molecular Weight (calculated)

17544.5 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.653

Length

158 amino acids

Sequence
(BLAST)

001: MSLIRRSNVF DPFSLDFFDP FDGFPFGSGS SNSGGSLVPR TSSDTAAFAG ARIDWKETPE AHVFKADVPG LKKEEVKVEV EDGNILQISG ERNKEQEEKT
101: DTWHRVERSS GKFLRRFRLP ENAKAEQVKA SMENGVLTVT VPKEEAKNPE VKAIQISG

Best Arabidopsis Sequence Match ( AT3G46230.1 )
(BLAST)

001: MSLVPSFFGG RRTNVFDPFS LDVWDPFEGF LTPGLTNAPA KDVAAFTNAK VDWRETPEAH VFKADVPGLK KEEVKVEVED GNILQISGER SSENEEKSDT
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG

Arabidopsis Description

HSP17.4A17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.