Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G110200.1 | Wheat | mitochondrion | 96.61 | 91.94 |
| TraesCSU01G019000.1 | Wheat | mitochondrion | 95.48 | 90.86 |
| TraesCS6A01G087600.1 | Wheat | cytosol | 94.92 | 90.81 |
| Os02t0128000-00 | Rice | cytosol | 71.19 | 71.19 |
| EES04437 | Sorghum | mitochondrion | 72.32 | 69.95 |
| Zm00001d053965_P001 | Maize | mitochondrion, plastid | 71.75 | 69.02 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 38.42 | 43.04 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 36.16 | 42.67 |
| HORVU3Hr1G007380.1 | Barley | mitochondrion | 38.42 | 34.87 |
| HORVU3Hr1G006530.1 | Barley | cytosol | 38.98 | 32.86 |
| HORVU3Hr1G007500.4 | Barley | cytosol, plastid | 38.42 | 31.48 |
| HORVU2Hr1G077710.2 | Barley | endoplasmic reticulum, golgi | 38.42 | 29.69 |
| HORVU0Hr1G020420.1 | Barley | plastid | 27.68 | 28.66 |
| HORVU3Hr1G006930.1 | Barley | cytosol | 25.99 | 27.88 |
| HORVU2Hr1G120170.1 | Barley | cytosol | 38.42 | 27.42 |
| HORVU4Hr1G015170.1 | Barley | cytosol, endoplasmic reticulum | 35.59 | 26.25 |
| HORVU3Hr1G006940.2 | Barley | cytosol | 24.29 | 17.7 |
Protein Annotations
| EMBL:AK370937 | EnsemblPlants:HORVU6Hr1G015130.1 | EnsemblPlantsGene:HORVU6Hr1G015130 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 |
| InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF189 | PFAM:PF00011 |
| PFscan:PS01031 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI0002007B9D | UniProt:F2E463 | MapMan:35.1 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E463]
Coordinates
chrchr6H:-:32878937..32879945
Molecular Weight (calculated)
19263.1 Da
IEP (calculated)
7.913
GRAVY (calculated)
-0.480
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMISNMLGR RQPPPPQQQQ PAGHKTNGHG GGGEVVEPVS IDILEPFMEA ISLKAFGGPA LGLPFSTASM DWKETPTAHV FMADVPGLRR EEVKVEVEQE
101: RVLRISGQRA RAAEDKGDRW HRVERSAEKF VRTVRLPPNA DVDGGGVHAA LDNGVLTITI PKDDGKKAYG RIIPITN
101: RVLRISGQRA RAAEDKGDRW HRVERSAEKF VRTVRLPPNA DVDGGGVHAA LDNGVLTITI PKDDGKKAYG RIIPITN
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.