Factsheet for HORVU4Hr1G060760.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G060720.2
HORVU4Hr1G060760.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	HORVU4Hr1G060720.2	AT5G59720.1	21798944
AT5G59720.1	HORVU4Hr1G060760.1	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G212500.1	Wheat	cytosol	93.33	90.32
TraesCS4A01G092600.1	Wheat	cytosol	92.0	89.03
TraesCS4A01G092700.1	Wheat	cytosol	91.33	88.39
Zm00001d028561_P001	Maize	cytosol	85.33	80.5
EER95120	Sorghum	cytosol	84.0	79.75
HORVU4Hr1G060720.2	Barley	cytosol	82.0	77.85
Bra020295.1-P	Field mustard	cytosol	65.33	64.47
CDY60563	Canola	cytosol	65.33	64.47
CDY56096	Canola	cytosol	64.67	63.82
Bra006697.1-P	Field mustard	cytosol	64.0	63.16
AT3G46230.1	Thale cress	cytosol	65.33	62.82
AT5G59720.1	Thale cress	cytosol	67.33	62.73
Bra002539.1-P	Field mustard	plastid	66.67	62.5
AT1G53540.1	Thale cress	cytosol	65.33	62.42
CDY49575	Canola	plastid	66.0	61.88
CDX88719	Canola	cytosol	66.0	61.88
CDX71079	Canola	cytosol	66.0	61.88
CDX86069	Canola	cytosol	63.33	60.51
Bra018216.1-P	Field mustard	cytosol	63.33	60.51
CDX99119	Canola	cytosol	62.67	59.87
HORVU3Hr1G007380.1	Barley	mitochondrion	66.67	51.28
HORVU3Hr1G006530.1	Barley	cytosol	66.67	47.62
HORVU3Hr1G007500.4	Barley	cytosol, plastid	66.0	45.83
HORVU2Hr1G120170.1	Barley	cytosol	64.67	39.11
HORVU3Hr1G006930.1	Barley	cytosol	41.33	37.58
HORVU6Hr1G015130.1	Barley	cytosol	42.67	36.16
HORVU0Hr1G020420.1	Barley	plastid	36.67	32.16
HORVU2Hr1G077710.2	Barley	endoplasmic reticulum, golgi	43.33	28.38
HORVU4Hr1G015170.1	Barley	cytosol, endoplasmic reticulum	42.67	26.67
HORVU3Hr1G006940.2	Barley	cytosol	38.0	23.46

Protein Annotations

EnsemblPlants:HORVU4Hr1G060760.1	EnsemblPlantsGene:HORVU4Hr1G060760	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF240	PFAM:PF00011	PFscan:PS01031
SEG:seg	SUPFAM:SSF49764	UniParc:UPI0002969718	UniProt:M0VDB7	MapMan:19.1.8.1	:

Description

No Description!

Coordinates

chrchr4H:-:509917917..509918846

Molecular Weight (calculated)

16764.6 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.673

Length

150 amino acids

Sequence
(BLAST)

001: MSLIRRGDVF DPFSLDLWDP FGSGSGSVFP RTTDSETAAF AGARIDWKET PDAHVFKADV PGLRKEEVKV EVDDGNVLQI SGERNKEQEE KTDTWHHVER
101: SSGRFLRRFR LPDNARAEEI KAAMENGVLT VTVPKAEAKK PDVKPVQITG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.