CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71079
CDX88719
CDY49575
CDY56096
CDY60563

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	CDX71079	AT5G59720.1	21798944
AT5G59720.1	CDX88719	AT5G59720.1	21798944
AT5G59720.1	CDY49575	AT5G59720.1	21798944
AT5G59720.1	CDY56096	AT5G59720.1	21798944
AT5G59720.1	CDY60563	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71079	Canola	cytosol	96.25	96.25
Bra006697.1-P	Field mustard	cytosol	91.25	96.05
CDY60563	Canola	cytosol	90.0	94.74
CDY56096	Canola	cytosol	89.38	94.08
AT5G59720.1	Thale cress	cytosol	92.5	91.93
CDY49575	Canola	plastid	91.88	91.88
CDX86069	Canola	cytosol	81.88	83.44
CDX99119	Canola	cytosol	81.25	82.8
TraesCS4A01G092200.1	Wheat	cytosol	71.88	76.16
TraesCS4B01G212200.1	Wheat	cytosol	73.75	75.16
TraesCS4D01G213100.1	Wheat	cytosol	73.12	74.52
TraesCS4D01G212300.1	Wheat	cytosol	72.5	73.89
TraesCS4B01G212300.1	Wheat	cytosol	71.25	73.55
TraesCS4A01G092100.1	Wheat	cytosol	72.5	73.42
TraesCS4D01G213300.1	Wheat	cytosol	71.88	73.25
EER95124	Sorghum	cytosol	71.88	72.78
HORVU4Hr1G060720.2	Barley	cytosol	71.88	72.78
Os03t0266900-02	Rice	cytosol	70.0	72.73
Zm00001d028557_P001	Maize	mitochondrion	71.25	72.15
Zm00001d028555_P001	Maize	extracellular, plasma membrane	71.25	72.15
Os03t0267200-01	Rice	cytosol, plastid	69.38	69.81
EER95120	Sorghum	cytosol	68.75	69.62
Os03t0267000-00	Rice	cytosol, plastid	70.0	69.57
KXG39718	Sorghum	cytosol	68.12	69.43
TraesCS4D01G212500.1	Wheat	cytosol	66.88	69.03
Os03t0266300-01	Rice	nucleus, plasma membrane	69.38	68.94
CDX97881	Canola	cytosol	65.62	68.63
CDY51363	Canola	cytosol	65.0	68.42
TraesCS4A01G092900.1	Wheat	cytosol	67.5	68.35
CDY53371	Canola	cytosol	66.25	67.95
CDY45448	Canola	cytosol	66.25	67.95
TraesCS4A01G092600.1	Wheat	cytosol	65.62	67.74
TraesCS4A01G092700.1	Wheat	cytosol	65.62	67.74
TraesCS4D01G212200.1	Wheat	cytosol	68.12	67.7
Zm00001d028561_P001	Maize	cytosol	66.25	66.67
TraesCS4B01G211600.1	Wheat	cytosol	65.0	66.24
HORVU4Hr1G060760.1	Barley	cytosol	61.88	66.0
TraesCS4A01G092800.1	Wheat	cytosol	65.0	65.82
TraesCS4D01G212400.1	Wheat	cytosol	65.0	65.82
CDY53372	Canola	cytosol, plastid	63.12	65.16
Zm00001d047841_P001	Maize	cytosol	66.25	65.03
CDY45447	Canola	cytosol	63.75	64.15
CDY60723	Canola	cytosol	38.12	43.88
CDY01718	Canola	cytosol	36.88	42.45
CDX93767	Canola	endoplasmic reticulum, extracellular, golgi	40.62	37.79
CDX86006	Canola	extracellular	39.38	36.63
CDY05088	Canola	cytosol	44.38	36.04
CDX90748	Canola	extracellular	43.75	35.53
CDY68135	Canola	cytosol	33.75	34.84

Protein Annotations

EnsemblPlants:CDX88719	EnsemblPlantsGene:GSBRNA2T00148770001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011	PFscan:PS01031
ProteinID:CDX88719	ProteinID:CDX88719.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EF209F	MapMan:19.1.8.1

Description

BnaA03g09300D

Coordinates

chrLK031856:+:657234..657716

Molecular Weight (calculated)

17942.3 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.616

Length

160 amino acids

Sequence
(BLAST)

001: MSLVPSLFGG RRSNVFDPFS LDAWDPFEGF FTPSALANAS GSTARDIAAF TNARVDWKET PEAHVFKADL PGLKKEEVKV EVEDKNILQI SGERSKENEE
101: KSDKWHRVER ASGKFMRRFK LPENAKMEEV KATMENGVLT VMVPKAPEKK PEVKSIDISG

Best Arabidopsis Sequence Match ( AT5G59720.1 )
(BLAST)

001: MSLIPSIFGG RRSNVFDPFS QDLWDPFEGF FTPSSALANA STARDVAAFT NARVDWKETP EAHVFKADLP GLKKEEVKVE VEDKNVLQIS GERSKENEEK
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N

Arabidopsis Description

HSP18.118.1 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19037]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.