Factsheet for Os03t0266300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 17407182
nucleus: 18022940
plasma membrane: 18260611
nucleus: 26035336
plastid: 27992503

msms PMID: 17407182 doi

F Chen, Y Yuan, Q Li, Z He

National Key laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, The Chinese Academy of Sciences, Shanghai, China.

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0266300-01
Os03t0266900-02
Os03t0267000-00
Os03t0267200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	Os03t0266300-01	AT5G59720.1	21798944
AT5G59720.1	Os03t0266900-02	AT5G59720.1	21798944
AT5G59720.1	Os03t0267000-00	AT5G59720.1	21798944
AT5G59720.1	Os03t0267200-01	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G092200.1	Wheat	cytosol	86.96	92.72
Os03t0267000-00	Rice	cytosol, plastid	92.55	92.55
Zm00001d028557_P001	Maize	mitochondrion	90.06	91.77
Os03t0266900-02	Rice	cytosol	87.58	91.56
Zm00001d028555_P001	Maize	extracellular, plasma membrane	89.44	91.14
TraesCS4D01G213100.1	Wheat	cytosol	88.82	91.08
TraesCS4A01G092100.1	Wheat	cytosol	88.82	90.51
EER95124	Sorghum	cytosol	88.82	90.51
KXG39718	Sorghum	cytosol	87.58	89.81
TraesCS4D01G213300.1	Wheat	cytosol	87.58	89.81
TraesCS4D01G212300.1	Wheat	cytosol	87.58	89.81
TraesCS4B01G212300.1	Wheat	cytosol	86.34	89.68
TraesCS4B01G212200.1	Wheat	cytosol	86.96	89.17
Os03t0267200-01	Rice	cytosol, plastid	87.58	88.68
HORVU4Hr1G060720.2	Barley	cytosol	86.96	88.61
Zm00001d047841_P001	Maize	cytosol	85.09	84.05
Os01t0136200-01	Rice	cytosol, plastid	70.81	76.0
Os01t0136100-01	Rice	cytosol, nucleus, plastid	70.19	75.33
Os01t0136000-00	Rice	cytosol	69.57	75.17
Bra020295.1-P	Field mustard	cytosol	68.32	72.37
CDY60563	Canola	cytosol	68.32	72.37
CDY56096	Canola	cytosol	67.7	71.71
Bra006697.1-P	Field mustard	cytosol	67.08	71.05
AT1G53540.1	Thale cress	cytosol	68.32	70.06
AT3G46230.1	Thale cress	cytosol	67.7	69.87
CDX99119	Canola	cytosol	67.7	69.43
CDX86069	Canola	cytosol	67.7	69.43
CDX88719	Canola	cytosol	68.94	69.38
CDX71079	Canola	cytosol	68.94	69.38
Bra002539.1-P	Field mustard	plastid	68.94	69.38
AT5G59720.1	Thale cress	cytosol	68.94	68.94
Bra018216.1-P	Field mustard	cytosol	67.08	68.79
CDY49575	Canola	plastid	67.08	67.5
Os01t0135800-01	Rice	cytosol	49.07	52.67
Os01t0135900-02	Rice	plasma membrane	43.48	42.17
Os06t0253100-01	Rice	mitochondrion	36.65	40.41
Os02t0128000-00	Rice	cytosol	37.89	34.46
Os04t0445100-01	Rice	nucleus, plastid	40.99	30.7
Os11t0244200-01	Rice	endoplasmic reticulum	38.51	30.1

Protein Annotations

MapMan:19.1.8.1	Gene3D:2.60.40.790	EntrezGene:4332357	EntrezGene:4332361	InterPro:A-crystallin/Hsp20_dom	ProteinID:AAK54445.1
ProteinID:AAP06878.1	EMBL:AB110191	ProteinID:ABF95148.1	EMBL:AK073671	EMBL:AK104129	EMBL:AK119239
EMBL:AK119616	ProteinID:BAF11571.1	ProteinID:BAS83414.1	EMBL:EU846987	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0016032	GO:GO:0042542	GO:GO:0045471	GO:GO:0046685
GO:GO:0046686	GO:GO:0046688	EMBL:GU120341	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EMBL:KR905692	EnsemblPlantsGene:Os03g0266300	EnsemblPlants:Os03t0266300-01	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF240	UniProt:Q84Q77	SUPFAM:SSF49764	UniParc:UPI00000AB021	RefSeq:XP_015630471.1
RefSeq:XP_015631116.1	SEG:seg	:	:	:	:

Description

17.9 KDA CLASS I HEAT SHOCK PROTEIN 1Class I low-molecular-weight heat shock protein 17.9. (Os03t0266300-01);Class I low-molecular-weight heat shock protein 17.9. (Os03t0266300-03)

Coordinates

chr3:+:8805567..8806556

Molecular Weight (calculated)

17911.0 Da

IEP (calculated)

5.864

GRAVY (calculated)

-0.680

Length

161 amino acids

Sequence
(BLAST)

001: MSLIRRSNVF DPFSLDLWDP FDGFPFGSGG SSSGSIFPSF PRGASSETAA FAGARIDWKE TPEAHVFKAD VPGLKKEEVK VEVDDGNILQ ISGERNKEQE
101: EKTDQWHRVE RSSGKFLRRF RLPDNAKPEQ IKASMENGVL TVTVPKEEAK KPDVKSIQIS G

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.