Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G213100.1 | Wheat | cytosol | 94.84 | 93.63 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 94.19 | 92.41 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 93.55 | 92.36 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 93.55 | 92.36 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 93.55 | 91.77 |
| Zm00001d028557_P001 | Maize | mitochondrion | 89.03 | 87.34 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 89.03 | 87.34 |
| EER95124 | Sorghum | cytosol | 88.39 | 86.71 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 89.68 | 86.34 |
| KXG39718 | Sorghum | cytosol | 85.81 | 84.71 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 83.23 | 82.17 |
| Zm00001d047841_P001 | Maize | cytosol | 83.23 | 79.14 |
| CDY60563 | Canola | cytosol | 72.26 | 73.68 |
| Bra020295.1-P | Field mustard | cytosol | 72.26 | 73.68 |
| CDY56096 | Canola | cytosol | 71.61 | 73.03 |
| TraesCS3B01G049900.1 | Wheat | cytosol | 70.97 | 72.85 |
| TraesCS3B01G049800.1 | Wheat | cytosol | 70.97 | 72.85 |
| AT3G46230.1 | Thale cress | cytosol | 72.9 | 72.44 |
| Bra006697.1-P | Field mustard | cytosol | 70.97 | 72.37 |
| TraesCS5B01G245700.1 | Wheat | cytosol | 70.97 | 71.43 |
| CDX88719 | Canola | cytosol | 73.55 | 71.25 |
| CDX71079 | Canola | cytosol | 73.55 | 71.25 |
| CDX86069 | Canola | cytosol | 71.61 | 70.7 |
| AT5G59720.1 | Thale cress | cytosol | 72.9 | 70.19 |
| Bra018216.1-P | Field mustard | cytosol | 70.97 | 70.06 |
| AT1G53540.1 | Thale cress | cytosol | 70.97 | 70.06 |
| CDX99119 | Canola | cytosol | 70.97 | 70.06 |
| Bra002539.1-P | Field mustard | plastid | 72.26 | 70.0 |
| CDY49575 | Canola | plastid | 70.32 | 68.12 |
| TraesCS4B01G211700.1 | Wheat | cytosol | 53.55 | 66.94 |
| TraesCS7B01G088600.1 | Wheat | cytosol | 50.32 | 49.37 |
| TraesCS7B01G088700.1 | Wheat | cytosol | 50.32 | 49.37 |
| TraesCS3B01G048600.1 | Wheat | cytosol | 47.74 | 48.05 |
| TraesCS3B01G048700.1 | Wheat | cytosol | 44.52 | 42.07 |
| TraesCS7B01G109100.1 | Wheat | mitochondrion, peroxisome | 37.42 | 42.03 |
| TraesCS3B01G048800.1 | Wheat | cytosol | 43.23 | 40.61 |
| TraesCS6B01G110200.1 | Wheat | mitochondrion | 44.52 | 37.1 |
| TraesCS4B01G089800.1 | Wheat | endoplasmic reticulum | 41.29 | 31.53 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G212300.1 | EnsemblPlantsGene:TraesCS4B01G212300 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06472 | MapMan:19.1.8.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:450685882..450686349
Molecular Weight (calculated)
17377.5 Da
IEP (calculated)
5.868
GRAVY (calculated)
-0.626
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRSNVF DPFSLDLWDP FDGFPFGSDG SGSLVPRTSS DTVAFAGARI DWKETPVAHV FKADVPGLKK EEVKVEVEDG NILQISGERN KEQEEKTDTW
101: HRVERSSGKF LRRFRLPENA KAEQVKASME NGVLTVTVPK EEAKKPEVKS IQISS
101: HRVERSSGKF LRRFRLPENA KAEQVKASME NGVLTVTVPK EEAKKPEVKS IQISS
001: MSLVPSFFGG RRTNVFDPFS LDVWDPFEGF LTPGLTNAPA KDVAAFTNAK VDWRETPEAH VFKADVPGLK KEEVKVEVED GNILQISGER SSENEEKSDT
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG
Arabidopsis Description
HSP17.4A17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.