CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95120
EER95124
KXG39718

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	EER95120	AT5G59720.1	21798944
AT5G59720.1	EER95124	AT5G59720.1	21798944
AT5G59720.1	KXG39718	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047841_P001	Maize	cytosol	95.54	92.02
EER95124	Sorghum	cytosol	89.81	89.24
EER95120	Sorghum	cytosol	89.81	89.24
TraesCS4A01G092200.1	Wheat	cytosol	85.35	88.74
TraesCS4A01G092900.1	Wheat	cytosol	89.17	88.61
Os03t0266900-02	Rice	cytosol	85.99	87.66
TraesCS4D01G212200.1	Wheat	cytosol	89.81	87.58
Os03t0266300-01	Rice	nucleus, plasma membrane	89.81	87.58
TraesCS4D01G213100.1	Wheat	cytosol	87.26	87.26
Os03t0267000-00	Rice	cytosol, plastid	89.17	86.96
TraesCS4A01G092100.1	Wheat	cytosol	87.26	86.71
TraesCS4A01G092800.1	Wheat	cytosol	87.26	86.71
TraesCS4D01G212400.1	Wheat	cytosol	86.62	86.08
TraesCS4B01G211600.1	Wheat	cytosol	85.99	85.99
TraesCS4D01G213300.1	Wheat	cytosol	85.99	85.99
TraesCS4B01G212300.1	Wheat	cytosol	84.71	85.81
TraesCS4B01G212200.1	Wheat	cytosol	85.35	85.35
HORVU4Hr1G060720.2	Barley	cytosol	85.35	84.81
TraesCS4D01G212300.1	Wheat	cytosol	84.71	84.71
Os03t0267200-01	Rice	cytosol, plastid	85.35	84.28
EES00358	Sorghum	cytosol	70.7	73.51
EES02532	Sorghum	cytosol	70.7	73.03
EES02531	Sorghum	cytosol	70.7	73.03
EES00359	Sorghum	cytosol	68.79	72.0
CDY60563	Canola	cytosol	68.79	71.05
Bra020295.1-P	Field mustard	cytosol	68.79	71.05
Bra006697.1-P	Field mustard	cytosol	67.52	69.74
Bra002539.1-P	Field mustard	plastid	70.7	69.38
AT3G46230.1	Thale cress	cytosol	68.79	69.23
CDY56096	Canola	cytosol	66.88	69.08
AT5G59720.1	Thale cress	cytosol	70.7	68.94
AT1G53540.1	Thale cress	cytosol	68.79	68.79
CDX71079	Canola	cytosol	70.06	68.75
CDY49575	Canola	plastid	69.43	68.12
CDX88719	Canola	cytosol	69.43	68.12
CDX86069	Canola	cytosol	67.52	67.52
CDX99119	Canola	cytosol	66.88	66.88
Bra018216.1-P	Field mustard	cytosol	66.88	66.88
EES02535	Sorghum	cytosol	49.68	52.0
EES02533	Sorghum	cytosol	41.4	39.39
EER89539	Sorghum	mitochondrion	35.67	37.84
EES04437	Sorghum	mitochondrion	40.76	34.97
EES08263	Sorghum	endoplasmic reticulum	42.68	32.37
KXG26390	Sorghum	endoplasmic reticulum, extracellular, golgi	43.31	31.48

Protein Annotations

EnsemblPlants:KXG39718	EnsemblPlantsGene:SORBI_3001G425600	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF240	PFAM:PF00011	PFscan:PS01031
ProteinID:KXG39718	ProteinID:KXG39718.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0003C71A5E	UniProt:A0A1B6QP65
MapMan:19.1.8.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:70540575..70541384

Molecular Weight (calculated)

17422.4 Da

IEP (calculated)

5.372

GRAVY (calculated)

-0.620

Length

157 amino acids

Sequence
(BLAST)

001: MSLIRRGSAF DPFSLDLWDP FQGFPFGSGS SSLFPSFGGT NSETAAFAGA RIDWKETPEA HVFKADVPGL KKEEVKVEVE DGNVLQISGE RNKEQEEKTD
101: TWHRVERSSG KFLRRFRLPE NAKTEQISAS MENGVLTVTV PKEEAKKADV KSIQISG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.