Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59720.1 | CDX71079 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDX88719 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDY49575 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDY56096 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | CDY60563 | AT5G59720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002539.1-P | Field mustard | plastid | 98.12 | 98.12 |
| CDX88719 | Canola | cytosol | 91.88 | 91.88 |
| CDY60563 | Canola | cytosol | 86.25 | 90.79 |
| CDX71079 | Canola | cytosol | 90.62 | 90.62 |
| CDY56096 | Canola | cytosol | 84.38 | 88.82 |
| AT5G59720.1 | Thale cress | cytosol | 87.5 | 86.96 |
| CDX86069 | Canola | cytosol | 79.38 | 80.89 |
| CDX99119 | Canola | cytosol | 78.75 | 80.25 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 68.12 | 72.19 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 70.62 | 71.97 |
| EER95124 | Sorghum | cytosol | 70.62 | 71.52 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 70.0 | 71.34 |
| Zm00001d028557_P001 | Maize | mitochondrion | 70.0 | 70.89 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 70.0 | 70.89 |
| TraesCS4D01G212300.1 | Wheat | cytosol | 69.38 | 70.7 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 68.12 | 70.32 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 69.38 | 70.25 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 68.75 | 70.06 |
| EER95120 | Sorghum | cytosol | 68.75 | 69.62 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 68.75 | 69.62 |
| Os03t0266900-02 | Rice | cytosol | 66.88 | 69.48 |
| KXG39718 | Sorghum | cytosol | 68.12 | 69.43 |
| TraesCS4D01G212500.1 | Wheat | cytosol | 66.88 | 69.03 |
| CDX97881 | Canola | cytosol | 65.0 | 67.97 |
| CDY53371 | Canola | cytosol | 66.25 | 67.95 |
| CDY45448 | Canola | cytosol | 66.25 | 67.95 |
| Os03t0267200-01 | Rice | cytosol, plastid | 67.5 | 67.92 |
| Zm00001d028561_P001 | Maize | cytosol | 67.5 | 67.92 |
| Os03t0267000-00 | Rice | cytosol, plastid | 68.12 | 67.7 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 68.12 | 67.7 |
| CDY51363 | Canola | cytosol | 63.75 | 67.11 |
| CDY53372 | Canola | cytosol, plastid | 65.0 | 67.1 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 66.25 | 67.09 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 67.5 | 67.08 |
| TraesCS4A01G092600.1 | Wheat | cytosol | 64.38 | 66.45 |
| TraesCS4A01G092700.1 | Wheat | cytosol | 64.38 | 66.45 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 65.0 | 66.24 |
| CDY45447 | Canola | cytosol | 65.62 | 66.04 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 61.88 | 66.0 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 65.0 | 65.82 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 65.0 | 65.82 |
| Zm00001d047841_P001 | Maize | cytosol | 66.25 | 65.03 |
| CDY60723 | Canola | cytosol | 36.88 | 42.45 |
| CDY01718 | Canola | cytosol | 35.62 | 41.01 |
| CDX93767 | Canola | endoplasmic reticulum, extracellular, golgi | 41.25 | 38.37 |
| CDX86006 | Canola | extracellular | 40.0 | 37.21 |
| CDY05088 | Canola | cytosol | 45.0 | 36.55 |
| CDX90748 | Canola | extracellular | 44.38 | 36.04 |
| CDY68135 | Canola | cytosol | 33.75 | 34.84 |
Protein Annotations
| EnsemblPlants:CDY49575 | EnsemblPlantsGene:GSBRNA2T00093304001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF241 | PFAM:PF00011 | PFscan:PS01031 |
| ProteinID:CDY49575 | ProteinID:CDY49575.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI0001D62DED | UniProt:A0A078IFB5 |
| MapMan:19.1.8.1 | : | : | : | : | : |
Description
BnaA10g12710DBnaA10g12710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFB5]
Coordinates
chrLK032843:+:68912..69394
Molecular Weight (calculated)
18021.3 Da
IEP (calculated)
7.790
GRAVY (calculated)
-0.693
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIPSFFGG RRSNAFNPFS LDAWDPFEGF FTPSSLANAS GSTAREMAAF TNARVDWKET PEAHMFKADL PGLKKEEVKV EVEDKNILQI SGERSKENEE
101: KSDKWHRVER ASGKFMRRFK LPENAKMEEV KAAMENGVLT ITVPKAPEKK HEVKSVDISG
101: KSDKWHRVER ASGKFMRRFK LPENAKMEEV KAAMENGVLT ITVPKAPEKK HEVKSVDISG
001: MSLIPSIFGG RRSNVFDPFS QDLWDPFEGF FTPSSALANA STARDVAAFT NARVDWKETP EAHVFKADLP GLKKEEVKVE VEDKNVLQIS GERSKENEEK
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N
Arabidopsis Description
HSP18.118.1 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19037]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.