CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45447	Canola	cytosol	96.77	94.34
CDY53371	Canola	cytosol	88.39	87.82
CDY45448	Canola	cytosol	88.39	87.82
AT2G29500.1	Thale cress	cytosol	83.87	84.97
CDX97881	Canola	cytosol	83.87	84.97
CDY51363	Canola	cytosol	82.58	84.21
KRH53964	Soybean	cytosol	70.32	72.67
KRH42105	Soybean	cytosol	71.61	72.55
KRH42102	Soybean	cytosol	71.61	72.55
KRH50105	Soybean	cytosol	69.68	70.59
KRH20402	Soybean	cytosol	69.68	70.13
KRH50107	Soybean	cytosol	69.03	69.93
KRH42103	Soybean	cytosol	69.03	69.93
KRH20403	Soybean	cytosol	72.26	69.57
PGSC0003DMT400078008	Potato	cytosol	69.03	69.48
KRH20397	Soybean	cytosol	69.03	69.48
KRH50104	Soybean	endoplasmic reticulum	71.61	68.94
Solyc06g076570.1.1	Tomato	cytosol, extracellular, nucleus	68.39	68.83
KRH20400	Soybean	cytosol	68.39	68.83
Solyc06g076560.1.1	Tomato	cytosol, nucleus	68.39	68.83
KRH63973	Soybean	cytosol	62.58	68.79
KRH50109	Soybean	cytosol	67.74	68.63
KRH50102	Soybean	cytosol	67.74	68.63
PGSC0003DMT400078006	Potato	cytosol	67.74	68.18
PGSC0003DMT400078201	Potato	cytosol	67.74	68.18
Solyc06g076520.1.1	Tomato	cytosol, nucleus, plastid	67.74	68.18
Solyc06g076540.1.1	Tomato	cytosol, nucleus	67.74	68.18
PGSC0003DMT400078007	Potato	cytosol	66.45	66.88
PGSC0003DMT400078202	Potato	cytosol	66.45	66.88
PGSC0003DMT400038705	Potato	cytosol	56.77	66.17
KRH20405	Soybean	cytosol	64.52	65.79
CDY60563	Canola	cytosol	64.52	65.79
Solyc09g059210.1.1	Tomato	cytosol, nucleus	28.39	65.67
KRH15020	Soybean	cytosol	67.1	65.41
CDY56096	Canola	cytosol	63.87	65.13
CDY49575	Canola	plastid	67.1	65.0
CDX99119	Canola	cytosol	65.81	64.97
KRH57663	Soybean	cytosol	55.48	63.24
CDX88719	Canola	cytosol	65.16	63.12
CDX71079	Canola	cytosol	65.16	63.12
CDX86069	Canola	cytosol	63.87	63.06
Solyc07g045610.1.1	Tomato	cytosol	30.97	61.54
CDY60723	Canola	cytosol	38.06	42.45
CDY01718	Canola	cytosol	36.77	41.01
CDX93767	Canola	endoplasmic reticulum, extracellular, golgi	43.23	38.95
CDX86006	Canola	extracellular	42.58	38.37
CDY05088	Canola	cytosol	45.16	35.53
CDX90748	Canola	extracellular	45.16	35.53
CDY68135	Canola	cytosol	34.19	34.19

Protein Annotations

EnsemblPlants:CDY53372	EnsemblPlantsGene:GSBRNA2T00010518001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190	PFAM:PF00011	PFscan:PS01031
ProteinID:CDY53372	ProteinID:CDY53372.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EDF119	UniProt:A0A078ITN3
MapMan:19.1.8.1	:	:	:	:	:

Description

BnaC04g54520DBnaC04g54520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITN3]

Coordinates

chrLK033193:+:59489..60264

Molecular Weight (calculated)

17511.4 Da

IEP (calculated)

6.281

GRAVY (calculated)

-0.605

Length

155 amino acids

Sequence
(BLAST)

001: MSMIPSFFGN SSSSSSFFDP FSLDVWDPFK DFPSSSSFSR ENSAIVNARV DWRETPEAHV FKADLPGLKK EEVKVEVEDN NVLKISGQRH VEKEDKSDTW
101: HRVERSSGQF TRKFRLPENV KMDQVKAALE NGVLTVTVPK VETEKASVRS VQISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.