Factsheet for Solyc06g076560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07400.1	Solyc06g009750.2.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076520.1.1	Tomato	cytosol, nucleus, plastid	98.05	98.05
PGSC0003DMT400078201	Potato	cytosol	98.05	98.05
Solyc06g076540.1.1	Tomato	cytosol, nucleus	96.1	96.1
Solyc06g076570.1.1	Tomato	cytosol, extracellular, nucleus	92.86	92.86
KRH50105	Soybean	cytosol	80.52	81.05
KRH50107	Soybean	cytosol	79.87	80.39
KRH53964	Soybean	cytosol	77.92	80.0
KRH42102	Soybean	cytosol	79.22	79.74
Solyc09g059210.1.1	Tomato	cytosol, nucleus	34.42	79.1
KRH42105	Soybean	cytosol	77.92	78.43
KRH20397	Soybean	cytosol	77.92	77.92
KRH20402	Soybean	cytosol	77.92	77.92
KRH42103	Soybean	cytosol	77.27	77.78
KRH50109	Soybean	cytosol	76.62	77.12
KRH20400	Soybean	cytosol	76.62	76.62
KRH50102	Soybean	cytosol	75.97	76.47
KRH50104	Soybean	endoplasmic reticulum	79.87	76.4
CDY51363	Canola	cytosol	75.32	76.32
AT2G29500.1	Thale cress	cytosol	75.32	75.82
KRH57663	Soybean	cytosol	66.88	75.74
CDX97881	Canola	cytosol	74.68	75.16
KRH20403	Soybean	cytosol	78.57	75.16
KRH20405	Soybean	cytosol	74.03	75.0
AT1G59860.1	Thale cress	cytosol	75.32	74.84
AT1G07400.1	Thale cress	cytosol	75.32	73.89
CDY53371	Canola	cytosol	74.03	73.08
CDY45448	Canola	cytosol	74.03	73.08
Solyc07g045610.1.1	Tomato	cytosol	37.01	73.08
KRH63973	Soybean	cytosol	66.88	73.05
Bra018383.1-P	Field mustard	cytosol	73.38	72.44
Solyc09g015020.1.1	Tomato	cytosol, nucleus	71.43	71.43
CDY53372	Canola	cytosol, plastid	68.83	68.39
Solyc09g015000.2.1	Tomato	cytosol	59.09	67.91
Bra031725.1-P	Field mustard	cytosol	69.48	67.3
Bra018384.1-P	Field mustard	cytosol	69.48	67.3
CDY45447	Canola	cytosol	68.83	66.67
Solyc02g093600.2.1	Tomato	cytosol, plastid	44.81	50.74
Solyc04g072250.2.1	Tomato	cytosol	46.75	44.17
Solyc04g014480.2.1	Tomato	mitochondrion	37.66	40.0
Solyc03g113930.1.1	Tomato	endoplasmic reticulum	46.75	38.3
Solyc01g102960.2.1	Tomato	endoplasmic reticulum	44.16	35.98
Solyc09g011710.2.1	Tomato	cytosol	46.75	34.62
Solyc11g020330.1.1	Tomato	plastid	42.21	34.21
Solyc10g086680.1.1	Tomato	mitochondrion	44.16	29.06

Protein Annotations

EMBL:AF123257	EMBL:AY150039	EnsemblPlants:Solyc06g076560.1.1	EnsemblPlantsGene:Solyc06g076560.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190
PFAM:PF00011	PFscan:PS01031	ProteinID:AEP95306.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00000AD08B
UniProt:Q9SYV0	MapMan:19.1.8.1	:	:	:	:

Description

17.6 kD class I small heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q9SYV0]

Coordinates

chr6:+:47559714..47560178

Molecular Weight (calculated)

17645.9 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.764

Length

154 amino acids

Sequence
(BLAST)

001: MSLIPRIFGD RRSSSMFDPF SIDVFDPFRE LGFPGTNSGE SSAFANTRID WKETPEAHVF KADLPGLKKE EVKVEVEEDR VLQISGERNV EKEDKNDKWH
101: RVERSSGKFM RRFRLPENAK MDQVKASMEN GVLTVTVPKE EVKKPEVKSI EISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.