CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20403	Soybean	cytosol	94.41	94.41
KRH20405	Soybean	cytosol	86.96	92.11
KRH50107	Soybean	cytosol	86.96	91.5
KRH50105	Soybean	cytosol	86.34	90.85
KRH20402	Soybean	cytosol	86.34	90.26
KRH42102	Soybean	cytosol	85.71	90.2
KRH50102	Soybean	cytosol	85.71	90.2
KRH50109	Soybean	cytosol	85.71	90.2
KRH20397	Soybean	cytosol	85.71	89.61
KRH42103	Soybean	cytosol	85.09	89.54
KRH42105	Soybean	cytosol	84.47	88.89
KRH53964	Soybean	cytosol	81.37	87.33
KRH20400	Soybean	cytosol	82.61	86.36
PGSC0003DMT400078008	Potato	cytosol	78.88	82.47
KRH63973	Soybean	cytosol	72.05	82.27
Solyc06g076570.1.1	Tomato	cytosol, extracellular, nucleus	77.64	81.17
Solyc06g076540.1.1	Tomato	cytosol, nucleus	77.64	81.17
PGSC0003DMT400078006	Potato	cytosol	77.02	80.52
PGSC0003DMT400078202	Potato	cytosol	76.4	79.87
Solyc06g076560.1.1	Tomato	cytosol, nucleus	76.4	79.87
PGSC0003DMT400038705	Potato	cytosol	65.84	79.7
CDY45448	Canola	cytosol	77.02	79.49
PGSC0003DMT400078007	Potato	cytosol	75.78	79.22
PGSC0003DMT400078201	Potato	cytosol	75.16	78.57
Solyc06g076520.1.1	Tomato	cytosol, nucleus, plastid	75.16	78.57
CDY53371	Canola	cytosol	75.78	78.21
Bra018383.1-P	Field mustard	cytosol	75.16	77.56
AT2G29500.1	Thale cress	cytosol	73.29	77.12
CDX97881	Canola	cytosol	72.67	76.47
CDY51363	Canola	cytosol	72.05	76.32
AT1G59860.1	Thale cress	cytosol	72.05	74.84
KRH57663	Soybean	cytosol	62.11	73.53
AT1G07400.1	Thale cress	cytosol	71.43	73.25
KRH15019	Soybean	cytosol, endoplasmic reticulum	71.43	73.25
KRH15020	Soybean	cytosol	72.05	72.96
KRH73111	Soybean	cytosol, endoplasmic reticulum, nucleus	68.32	71.9
CDY53372	Canola	cytosol, plastid	68.94	71.61
Bra018384.1-P	Field mustard	cytosol	69.57	70.44
Bra031725.1-P	Field mustard	cytosol	69.57	70.44
CDY45447	Canola	cytosol	68.94	69.81
KRH75757	Soybean	cytosol	62.11	69.44
KRH50108	Soybean	cytosol, plastid	42.24	49.28
KRH70223	Soybean	cytosol, nucleus	45.34	47.71
KRH72979	Soybean	cytosol, mitochondrion, peroxisome	41.61	46.53
KRH17351	Soybean	mitochondrion	40.99	45.83
KRH49235	Soybean	cytosol	40.99	42.31
KRH00090	Soybean	cytosol	44.72	42.11
KRH24720	Soybean	cytosol	36.02	42.03
KRH29724	Soybean	cytosol, plastid	36.65	39.86
KRG92477	Soybean	endoplasmic reticulum	45.34	38.02
KRH62434	Soybean	cytosol	36.65	37.58
KRH34328	Soybean	endoplasmic reticulum	45.34	37.44
KRH13798	Soybean	cytosol	38.51	36.9
KRG93360	Soybean	endoplasmic reticulum	43.48	35.53
KRH09251	Soybean	endoplasmic reticulum	42.24	34.52
KRH18614	Soybean	endoplasmic reticulum	42.24	34.34
KRG90262	Soybean	endoplasmic reticulum	37.89	31.28

Protein Annotations

EMBL:ACUP02004659	EnsemblPlants:KRH50104	EnsemblPlantsGene:GLYMA_07G200200	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190	PFAM:PF00011
PFscan:PS01031	ProteinID:KRH50104	ProteinID:KRH50104.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0001D62D3A
UniProt:A0A0R4J3Q7	MapMan:19.1.8.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:36874046..36875044

Molecular Weight (calculated)

18512.8 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.693

Length

161 amino acids

Sequence
(BLAST)

001: MSLIPNFFGG RRNNVFDPFS LDVWDPFKDF PFPNTLSSAS FPEFSRENSA FVSTRVDWKE TPEAHVFKAD IPGLKKEEVK VQIEDDKVLH ISGERNVEKE
101: DKNDTWHRVE RSSGKFMRRF RLPENAKVEQ VKASMENGVL TVTVPKEEVK KPDVKAIEIS G

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.