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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH15019 Soybean cytosol, endoplasmic reticulum 92.16 89.81
KRH50105 Soybean cytosol 74.51 74.51
KRH50107 Soybean cytosol 73.2 73.2
KRH53964 Soybean cytosol 70.59 72.0
KRH42102 Soybean cytosol 71.9 71.9
KRH42105 Soybean cytosol 71.9 71.9
KRH42103 Soybean cytosol 71.24 71.24
KRH50109 Soybean cytosol 70.59 70.59
KRH20402 Soybean cytosol 70.59 70.13
KRH20397 Soybean cytosol 69.93 69.48
KRH50102 Soybean cytosol 69.28 69.28
KRH20400 Soybean cytosol 69.28 68.83
KRH63973 Soybean cytosol 63.4 68.79
KRH50104 Soybean endoplasmic reticulum 71.9 68.32
KRH20403 Soybean cytosol 71.9 68.32
KRH15020 Soybean cytosol 70.59 67.92
KRH20405 Soybean cytosol 66.01 66.45
KRH57663 Soybean cytosol 56.86 63.97
KRH75757 Soybean cytosol 60.13 63.89
KRH70223 Soybean cytosol, nucleus 47.71 47.71
KRH17351 Soybean mitochondrion 41.18 43.75
KRH72979 Soybean cytosol, mitochondrion, peroxisome 40.52 43.06
KRH50108 Soybean cytosol, plastid 38.56 42.75
KRH00090 Soybean cytosol 45.1 40.35
KRH24720 Soybean cytosol 35.95 39.86
KRH49235 Soybean cytosol 39.87 39.1
KRH13798 Soybean cytosol 42.48 38.69
KRH29724 Soybean cytosol, plastid 36.6 37.84
KRG92477 Soybean endoplasmic reticulum 47.06 37.5
KRH62434 Soybean cytosol 37.91 36.94
KRH34328 Soybean endoplasmic reticulum 47.06 36.92
KRG93360 Soybean endoplasmic reticulum 47.06 36.55
KRH18614 Soybean endoplasmic reticulum 46.41 35.86
KRH09251 Soybean endoplasmic reticulum 43.14 33.5
KRG90262 Soybean endoplasmic reticulum 39.87 31.28
Protein Annotations
EMBL:ACUP02001266EnsemblPlants:KRH73111EnsemblPlantsGene:GLYMA_02G252800EntrezGene:100500307Gene3D:2.60.40.790InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20InterPro:HSP20-like_chaperoneInterPro:IPR002068InterPro:IPR008978PANTHER:PTHR11527PANTHER:PTHR11527:SF190
PFAM:PF00011PFscan:PS01031ProteinID:KRH73111ProteinID:KRH73111.1SUPFAM:SSF49764UniParc:UPI0001D62D34
UniProt:A0A0R0L186MapMan:19.1.8.1::::
Description
hypothetical protein
Coordinates
chr2:+:44009114..44009828
Molecular Weight (calculated)
17294.5 Da
IEP (calculated)
7.701
GRAVY (calculated)
-0.701
Length
153 amino acids
Sequence
(BLAST)
001: MSIIPNLFGG RRSNVFDPVS LDVWDPLEGF PFSTANAGES SAIANTRVDW KETPQAHVFS VDLPGLKKED VKVEVEDGRV LQISGEKTKE QEQKDDRWHR
101: IERSTGKFMR RFRLPENAKM DQVKAAMENG VLTVTVPKEE QKKPQVKSIQ ISG
Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.