CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29724	Soybean	cytosol, plastid	85.51	79.73
KRH50105	Soybean	cytosol	42.75	38.56
KRH50107	Soybean	cytosol	42.03	37.91
KRH42103	Soybean	cytosol	41.3	37.25
KRH63973	Soybean	cytosol	37.68	36.88
KRH50109	Soybean	cytosol	40.58	36.6
KRH50102	Soybean	cytosol	40.58	36.6
KRH42105	Soybean	cytosol	40.58	36.6
KRH42102	Soybean	cytosol	40.58	36.6
KRH20400	Soybean	cytosol	40.58	36.36
KRH20405	Soybean	cytosol	39.86	36.18
KRH50104	Soybean	endoplasmic reticulum	42.03	36.02
KRH73111	Soybean	cytosol, endoplasmic reticulum, nucleus	39.86	35.95
KRH20397	Soybean	cytosol	39.86	35.71
KRH20402	Soybean	cytosol	39.86	35.71
KRH20403	Soybean	cytosol	40.58	34.78
KRH53964	Soybean	cytosol	37.68	34.67
KRH15020	Soybean	cytosol	39.86	34.59
KRH15019	Soybean	cytosol, endoplasmic reticulum	39.13	34.39
CDY68135	Canola	cytosol	35.51	31.61
AT2G19310.1	Thale cress	cytosol	36.23	30.86
KRH75757	Soybean	cytosol	31.16	29.86
Zm00001d039942_P001	Maize	cytosol	31.16	28.86
EES02535	Sorghum	cytosol	31.16	28.67
KRH57663	Soybean	cytosol	27.54	27.94
KRH50108	Soybean	cytosol, plastid	27.54	27.54
GSMUA_Achr1P21150_001	Banana	cytosol	31.88	27.16
KRH70223	Soybean	cytosol, nucleus	28.99	26.14
TraesCS3D01G044400.1	Wheat	cytosol	28.99	25.81
KRH00090	Soybean	cytosol	31.88	25.73
Os01t0135800-01	Rice	cytosol	27.54	25.33
TraesCS3B01G048600.1	Wheat	cytosol	28.26	25.32
KRH49235	Soybean	cytosol	27.54	24.36
KRH17351	Soybean	mitochondrion	24.64	23.61
KRH62434	Soybean	cytosol	26.09	22.93
KRH72979	Soybean	cytosol, mitochondrion, peroxisome	23.91	22.92
KRH13798	Soybean	cytosol	27.54	22.62
KRG92477	Soybean	endoplasmic reticulum	28.26	20.31
KRH09251	Soybean	endoplasmic reticulum	28.26	19.8
KRH34328	Soybean	endoplasmic reticulum	27.54	19.49
KRG93360	Soybean	endoplasmic reticulum	26.81	18.78
KRH18614	Soybean	endoplasmic reticulum	26.81	18.69
KRG90262	Soybean	endoplasmic reticulum	26.09	18.46

Protein Annotations

EMBL:ACUP02007184	EMBL:BT089525	EnsemblPlants:KRH24720	EnsemblPlantsGene:GLYMA_12G058200	EntrezGene:100305751	Gene3D:2.60.40.790
InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF174	PFAM:PF00011	PFscan:PS01031	ProteinID:KRH24720	ProteinID:KRH24720.1	SEG:seg
SUPFAM:SSF49764	UniParc:UPI0001B14F11	UniProt:C6SWI2	MapMan:19.1.8.4	:	:

Description

hypothetical protein

Coordinates

chr12:+:4235968..4237273

Molecular Weight (calculated)

15706.6 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.285

Length

138 amino acids

Sequence
(BLAST)

001: MSIVPINQGH SQDSWDQFID FPLPPSISSF FPGFEFGFGS SVVNTRVDWR ETPRAHVWKV VLPGFTNEDV LVELQDQRVL QVSVESGNFL TRFKIPDNGN
101: LEQLKTNMRH GILLVTVPKF HQPTSNRNVR VVEIEGTD

Best Arabidopsis Sequence Match ( AT2G19310.1 )
(BLAST)

001: MSMIPISNRR RLSPGDRIWE PFELMNTFLD FPSPALFLSH HFPSLSREIF PQTSSSTVNT QLNWTETPTA HVFKAYLPGV DQDEVIAFVD EEGYLQICTG
101: DNKFMSRFKL PNNALTDQVT AWMEDEFLVV FVEKDASSSP PQLPEIEENR NVRVVEITGD DD

Arabidopsis Description

HSP18.518.5 kDa class IV heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:O64564]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.