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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_18s0001g01610.t01 Wine grape cytosol 58.82 56.6
PGSC0003DMT400079950 Potato cytosol 62.09 56.21
VIT_18s0001g01570.t01 Wine grape mitochondrion 58.82 55.21
Solyc04g072250.2.1 Tomato cytosol 56.86 53.37
KRH53964 Soybean cytosol 47.71 48.67
KRH75757 Soybean cytosol 45.1 47.92
KRH50107 Soybean cytosol 47.71 47.71
KRH73111 Soybean cytosol, endoplasmic reticulum, nucleus 47.71 47.71
TraesCS7B01G088700.1 Wheat cytosol 49.02 47.47
TraesCS7B01G088600.1 Wheat cytosol 49.02 47.47
KRH20402 Soybean cytosol 47.71 47.4
KRH20397 Soybean cytosol 47.71 47.4
KRH15019 Soybean cytosol, endoplasmic reticulum 48.37 47.13
TraesCS7D01G185500.1 Wheat cytosol 49.02 46.88
KRH15020 Soybean cytosol 48.37 46.54
KRH50105 Soybean cytosol 46.41 46.41
TraesCS7A01G183800.1 Wheat cytosol 46.41 45.81
KRH42102 Soybean cytosol 45.75 45.75
KRH50109 Soybean cytosol 45.75 45.75
KRH42105 Soybean cytosol 45.75 45.75
KRH20400 Soybean cytosol 45.75 45.45
KRH20405 Soybean cytosol 45.1 45.39
KRH50104 Soybean endoplasmic reticulum 47.71 45.34
KRH50102 Soybean cytosol 45.1 45.1
KRH42103 Soybean cytosol 45.1 45.1
KRH20403 Soybean cytosol 47.06 44.72
TraesCS7D01G185600.1 Wheat cytosol 39.87 44.2
KRH57663 Soybean cytosol 38.56 43.38
KRH63973 Soybean cytosol 35.95 39.01
KRH72979 Soybean cytosol, mitochondrion, peroxisome 34.64 36.81
KRH17351 Soybean mitochondrion 34.64 36.81
KRH50108 Soybean cytosol, plastid 29.41 32.61
KRH18614 Soybean endoplasmic reticulum 40.52 31.31
KRH49235 Soybean cytosol 31.37 30.77
KRG93360 Soybean endoplasmic reticulum 39.22 30.46
KRH00090 Soybean cytosol 32.68 29.24
KRG92477 Soybean endoplasmic reticulum 36.6 29.17
KRH13798 Soybean cytosol 32.03 29.17
KRH24720 Soybean cytosol 26.14 28.99
KRH34328 Soybean endoplasmic reticulum 35.29 27.69
KRH29724 Soybean cytosol, plastid 26.14 27.03
KRH62434 Soybean cytosol 27.45 26.75
KRH09251 Soybean endoplasmic reticulum 32.68 25.38
KRG90262 Soybean endoplasmic reticulum 31.37 24.62
Protein Annotations
EMBL:ACUP02000756EMBL:AF117885EnsemblPlants:KRH70223EnsemblPlantsGene:GLYMA_02G076600EntrezGene:547537Gene3D:2.60.40.790
InterPro:A-crystallin/Hsp20_domInterPro:HSP20InterPro:HSP20-like_chaperoneInterPro:IPR002068InterPro:IPR008978PANTHER:PTHR11527
PANTHER:PTHR11527:SF133PFAM:PF00011PFscan:PS01031ProteinID:KRH70223ProteinID:KRH70223.1SUPFAM:SSF49764
UniParc:UPI00000A2BD9UniProt:Q9XET1MapMan:35.1:::
Description
hypothetical protein
Coordinates
chr2:+:6670064..6671855
Molecular Weight (calculated)
17747.8 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.961
Length
153 amino acids
Sequence
(BLAST)
001: MDWIGAYRGG QRSRDWCDPS SPFTDLWDPR RVGDADDITS SLAHAHVDWR ETDKAHIFRA DLPGVKKEDL KVQVEENKIL QISGERVKEK EDQNDKWHRV
101: ERQCGSFLRR FRLPEDANPN QISCTLENGV LNVTVPKVEK KPENKNVRQI DVV
Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.