Factsheet for VIT_18s0001g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g01570.t01	Wine grape	mitochondrion	67.3	65.64
KRH70223	Soybean	cytosol, nucleus	56.6	58.82
PGSC0003DMT400079950	Potato	cytosol	60.38	56.8
Solyc04g072250.2.1	Tomato	cytosol	55.35	53.99
TraesCS7B01G088600.1	Wheat	cytosol	51.57	51.9
TraesCS7B01G088700.1	Wheat	cytosol	51.57	51.9
TraesCS7D01G185500.1	Wheat	cytosol	52.2	51.88
VIT_13s0019g03030.t01	Wine grape	cytosol	33.96	50.0
VIT_06s0004g05770.t01	Wine grape	cytosol	44.65	49.31
TraesCS7D01G185600.1	Wheat	cytosol	42.77	49.28
VIT_13s0019g02900.t01	Wine grape	cytosol	33.33	49.07
TraesCS7A01G183800.1	Wheat	cytosol	47.8	49.03
VIT_13s0019g03170.t01	Wine grape	cytosol	48.43	48.43
VIT_13s0019g02930.t01	Wine grape	cytosol	47.8	47.5
VIT_13s0019g02780.t01	Wine grape	cytosol	44.65	47.02
VIT_13s0019g02850.t01	Wine grape	cytosol	44.65	47.02
VIT_13s0019g03090.t01	Wine grape	cytosol	47.17	46.88
VIT_13s0019g03000.t01	Wine grape	cytosol	47.17	46.88
VIT_13s0019g02770.t01	Wine grape	cytosol	44.03	46.36
VIT_13s0019g02840.t01	Wine grape	cytosol	44.03	46.36
VIT_13s0019g02760.t01	Wine grape	cytosol	40.25	45.71
VIT_13s0019g02820.t01	Wine grape	cytosol	43.4	45.7
VIT_13s0019g03160.t01	Wine grape	cytosol	45.91	45.62
VIT_08s0058g00210.t01	Wine grape	cytosol	42.14	45.27
VIT_13s0019g02740.t01	Wine grape	cytosol	42.14	44.37
VIT_13s0019g02920.t01	Wine grape	cytosol	37.74	44.12
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	37.11	40.97
VIT_13s0019g00860.t01	Wine grape	cytosol	31.45	35.21
VIT_13s0019g03050.t01	Wine grape	cytosol	36.48	35.15
VIT_19s0085g01050.t01	Wine grape	cytosol	30.82	33.56
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	32.08	27.42
VIT_12s0035g01910.t01	Wine grape	cytosol	33.33	21.2

Protein Annotations

EntrezGene:100264933	wikigene:100264933	Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	ProteinID:CBI29333
ProteinID:CBI29333.3	UniProt:D7TFR0	EMBL:FN595772	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100264933	wikigene:LOC100264933	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF133	SUPFAM:SSF49764	TIGR:TC58479	UniParc:UPI00015CD3D8	ArrayExpress:VIT_18s0001g01610	EnsemblPlantsGene:VIT_18s0001g01610
EnsemblPlants:VIT_18s0001g01610.t01	unigene:Vvi.3291	RefSeq:XP_002264977	RefSeq:XP_002264977.1	:	:

Description

No Description!

Coordinates

chr18_random:+:2183110..2184273

Molecular Weight (calculated)

18005.0 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.731

Length

159 amino acids

Sequence
(BLAST)

001: MSSLGLWRGG GYDPWTPLSP SDAWDPFDFG FGVEKSWGRG PDDDVSALAH AHVDWRETDN AHVFRADLPG VRREELKVQV EDNNILKISG EKTKEKEEVD
101: DQWHRVERQR GSFLRRFRLP ENAITDRISS ALKDGVLTVT VPKKTESPSG VRTIHVAQL

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.