Factsheet for VIT_13s0019g02930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03000.t01	Wine grape	cytosol	98.75	98.75
VIT_13s0019g03090.t01	Wine grape	cytosol	87.5	87.5
VIT_13s0019g03160.t01	Wine grape	cytosol	84.38	84.38
VIT_13s0019g03030.t01	Wine grape	cytosol	55.62	82.41
VIT_08s0058g00210.t01	Wine grape	cytosol	75.62	81.76
VIT_13s0019g02900.t01	Wine grape	cytosol	55.0	81.48
VIT_13s0019g02920.t01	Wine grape	cytosol	68.12	80.15
GSMUA_Achr1P21160_001	Banana	cytosol	76.25	78.21
GSMUA_Achr9P00510_001	Banana	cytosol	75.0	76.43
VIT_13s0019g02770.t01	Wine grape	cytosol	71.25	75.5
VIT_13s0019g02780.t01	Wine grape	cytosol	71.25	75.5
VIT_13s0019g02850.t01	Wine grape	cytosol	71.25	75.5
VIT_13s0019g02760.t01	Wine grape	cytosol	65.62	75.0
VIT_13s0019g02820.t01	Wine grape	cytosol	70.62	74.83
VIT_13s0019g02840.t01	Wine grape	cytosol	70.62	74.83
VIT_13s0019g02740.t01	Wine grape	cytosol	70.62	74.83
VIT_06s0004g05770.t01	Wine grape	cytosol	66.88	74.31
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	66.88	74.31
VIT_13s0019g03170.t01	Wine grape	cytosol	68.12	68.55
GSMUA_Achr5P17640_001	Banana	cytosol	36.88	66.29
VIT_13s0019g03050.t01	Wine grape	cytosol	63.75	61.82
VIT_18s0001g01610.t01	Wine grape	cytosol	47.5	47.8
VIT_19s0085g01050.t01	Wine grape	cytosol	41.88	45.89
VIT_18s0001g01570.t01	Wine grape	mitochondrion	45.62	44.79
VIT_13s0019g00860.t01	Wine grape	cytosol	36.25	40.85
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	44.38	38.17
VIT_12s0035g01910.t01	Wine grape	cytosol	41.88	26.8

Protein Annotations

EntrezGene:100253085	wikigene:100253085	MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	EMBL:AM444460
EMBL:AM478886	EMBL:AM479704	ProteinID:CAN60868	ProteinID:CAN60868.1	ProteinID:CAN68540	ProteinID:CAN68540.1
ProteinID:CAN70834	ProteinID:CAN70834.1	ProteinID:CCB56266	ProteinID:CCB56266.1	UniProt:F6HNP7	EMBL:FN595998
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EntrezGene:LOC100253085	wikigene:LOC100253085
PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF251	SUPFAM:SSF49764	TIGR:TC52422
TIGR:TC60004	TIGR:TC69456	UniParc:UPI00019847F7	ArrayExpress:VIT_13s0019g02930	EnsemblPlantsGene:VIT_13s0019g02930	EnsemblPlants:VIT_13s0019g02930.t01
RefSeq:XP_002280935	RefSeq:XP_002280935.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:4112675..4113430

Molecular Weight (calculated)

18166.7 Da

IEP (calculated)

7.701

GRAVY (calculated)

-0.644

Length

160 amino acids

Sequence
(BLAST)

001: MALISSVLGG GRRSNIFDPI SLDIWDPFEG FPFSTTLANV PNSARETSAF VNTRIDWKET PEAHVFKADL PGLKKEEVKV EVEEGRVLKI SGERTKEQEE
101: KNDKWHRVER SSGKFLRRFR LPENAKMDEV KATMENGVLT VRVPKEEVKK PEVKAIEISG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.