Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g03090.t01 | Wine grape | cytosol | 90.62 | 90.62 |
| VIT_13s0019g03000.t01 | Wine grape | cytosol | 84.38 | 84.38 |
| VIT_13s0019g02930.t01 | Wine grape | cytosol | 84.38 | 84.38 |
| PGSC0003DMT400030386 | Potato | cytosol | 76.25 | 77.71 |
| Solyc09g015000.2.1 | Tomato | cytosol | 64.38 | 76.87 |
| VIT_13s0019g03030.t01 | Wine grape | cytosol | 51.88 | 76.85 |
| PGSC0003DMT400007587 | Potato | cytosol | 74.38 | 76.77 |
| PGSC0003DMT400030387 | Potato | cytosol | 73.75 | 76.62 |
| VIT_13s0019g02920.t01 | Wine grape | cytosol | 65.0 | 76.47 |
| VIT_08s0058g00210.t01 | Wine grape | cytosol | 70.62 | 76.35 |
| VIT_13s0019g02900.t01 | Wine grape | cytosol | 50.62 | 75.0 |
| PGSC0003DMT400030382 | Potato | cytosol | 71.25 | 74.03 |
| PGSC0003DMT400089913 | Potato | cytosol | 70.62 | 73.86 |
| Solyc09g015020.1.1 | Tomato | cytosol, nucleus | 70.62 | 73.38 |
| VIT_13s0019g02780.t01 | Wine grape | cytosol | 68.12 | 72.19 |
| VIT_13s0019g02850.t01 | Wine grape | cytosol | 68.12 | 72.19 |
| VIT_13s0019g02770.t01 | Wine grape | cytosol | 67.5 | 71.52 |
| VIT_13s0019g02820.t01 | Wine grape | cytosol | 67.5 | 71.52 |
| PGSC0003DMT400030385 | Potato | cytosol | 73.12 | 71.34 |
| VIT_13s0019g02740.t01 | Wine grape | cytosol | 66.88 | 70.86 |
| VIT_13s0019g02840.t01 | Wine grape | cytosol | 66.88 | 70.86 |
| VIT_13s0019g03010.t01 | Wine grape | cytosol, mitochondrion | 63.75 | 70.83 |
| VIT_13s0019g02760.t01 | Wine grape | cytosol | 61.88 | 70.71 |
| VIT_06s0004g05770.t01 | Wine grape | cytosol | 61.88 | 68.75 |
| VIT_13s0019g03170.t01 | Wine grape | cytosol | 65.62 | 66.04 |
| PGSC0003DMT400030381 | Potato | mitochondrion | 49.38 | 64.23 |
| PGSC0003DMT400088908 | Potato | cytosol | 39.38 | 60.58 |
| VIT_13s0019g03050.t01 | Wine grape | cytosol | 59.38 | 57.58 |
| TraesCS4B01G211700.1 | Wheat | cytosol | 42.5 | 54.84 |
| VIT_18s0001g01610.t01 | Wine grape | cytosol | 45.62 | 45.91 |
| VIT_18s0001g01570.t01 | Wine grape | mitochondrion | 44.38 | 43.56 |
| VIT_19s0085g01050.t01 | Wine grape | cytosol | 39.38 | 43.15 |
| VIT_13s0019g00860.t01 | Wine grape | cytosol | 36.25 | 40.85 |
| VIT_18s0089g01270.t01 | Wine grape | endoplasmic reticulum | 42.5 | 36.56 |
| VIT_12s0035g01910.t01 | Wine grape | cytosol | 43.12 | 27.6 |
Protein Annotations
| EntrezGene:100249611 | wikigene:100249611 | MapMan:19.1.8.1 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | ProteinID:CCB56246 |
| ProteinID:CCB56246.1 | UniProt:F6HNM7 | EMBL:FN595998 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | EntrezGene:LOC100249611 | wikigene:LOC100249611 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF251 | SUPFAM:SSF49764 | TIGR:TC54041 | UniParc:UPI000210AA41 | ArrayExpress:VIT_13s0019g03160 | EnsemblPlantsGene:VIT_13s0019g03160 |
| EnsemblPlants:VIT_13s0019g03160.t01 | unigene:Vvi.9419 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr13:+:4227250..4227937
Molecular Weight (calculated)
18020.3 Da
IEP (calculated)
9.051
GRAVY (calculated)
-0.631
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLISSVLGS GRRSNIFDPF SLDIWDPFEG FPFTTPLANV PSSTRETSAF ANARIDWKET PEAHVFKADL PGLKKEEVEE GRVLQISGER STEQEEKKDK
101: WHRVERSSGK FLRRFRLPEN AKMDEVKASL ENGVLTVTVP KEEVKKAEVK ASRSLAKALS
101: WHRVERSSGK FLRRFRLPEN AKMDEVKASL ENGVLTVTVP KEEVKKAEVK ASRSLAKALS
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.