Factsheet for PGSC0003DMT400030381

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
vacuole 1
mitochondrion 4
extracellular 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03030.t01	Wine grape	cytosol	60.16	68.52
VIT_13s0019g02900.t01	Wine grape	cytosol	59.35	67.59
PGSC0003DMT400030387	Potato	cytosol	79.67	63.64
PGSC0003DMT400030382	Potato	cytosol	78.05	62.34
PGSC0003DMT400030386	Potato	cytosol	78.86	61.78
Solyc09g015020.1.1	Tomato	cytosol, nucleus	76.42	61.04
PGSC0003DMT400007587	Potato	cytosol	75.61	60.0
PGSC0003DMT400030385	Potato	cytosol	78.86	59.15
PGSC0003DMT400089913	Potato	cytosol	72.36	58.17
VIT_13s0019g02920.t01	Wine grape	cytosol	62.6	56.62
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	62.6	53.47
PGSC0003DMT400038705	Potato	cytosol	56.91	52.63
VIT_13s0019g03090.t01	Wine grape	cytosol	68.29	52.5
PGSC0003DMT400078201	Potato	cytosol	63.41	50.65
GSMUA_Achr9P00510_001	Banana	cytosol	64.23	50.32
PGSC0003DMT400078008	Potato	cytosol	62.6	50.0
VIT_13s0019g03160.t01	Wine grape	cytosol	64.23	49.38
GSMUA_Achr1P21160_001	Banana	cytosol	61.79	48.72
PGSC0003DMT400078006	Potato	cytosol	60.98	48.7
PGSC0003DMT400078202	Potato	cytosol	60.16	48.05
PGSC0003DMT400078007	Potato	cytosol	60.16	48.05
GSMUA_Achr5P17640_001	Banana	cytosol	33.33	46.07
PGSC0003DMT400044066	Potato	cytosol	51.22	45.0
VIT_13s0019g03050.t01	Wine grape	cytosol	60.16	44.85
PGSC0003DMT400032851	Potato	cytosol	45.53	39.72
PGSC0003DMT400088908	Potato	cytosol	31.71	37.5
PGSC0003DMT400060736	Potato	mitochondrion	39.02	33.1
PGSC0003DMT400079950	Potato	cytosol	44.72	32.54
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	45.53	29.32
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	44.72	28.8
TraesCS4B01G211700.1	Wheat	cytosol	28.46	28.23
PGSC0003DMT400049226	Potato	cytosol	39.84	25.13
PGSC0003DMT400023932	Potato	endoplasmic reticulum	39.84	24.87
PGSC0003DMT400030603	Potato	cytosol	38.21	24.35
PGSC0003DMT400049225	Potato	mitochondrion	38.21	20.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400030381	EnsemblPlantsGene:PGSC0003DMG400011627	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011	PFscan:PS01031
PGSC:PGSC0003DMG400011627	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000295877A	UniProt:M1AU50	MapMan:35.1

Description

Chloroplast small heat shock protein class I [Source:PGSC_GENE;Acc:PGSC0003DMG400011627]

Coordinates

chr9:-:11631165..11631999

Molecular Weight (calculated)

14160.3 Da

IEP (calculated)

10.161

GRAVY (calculated)

-0.750

Length

123 amino acids

Sequence
(BLAST)

001: MPHHLLVKSL LLQMQKSIGK RPLKLTIFKV DVPGIKKEEV EVEVEEGRIL QISGERSREQ EEKNDQWHRM ERSSGKFLRR FRLPENAKTG EIKAAMENGV
101: LTVTVPKEEE KKKSEVKAID ISG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.