Factsheet for PGSC0003DMT400049225

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086680.1.1	Tomato	mitochondrion	88.03	88.03
PGSC0003DMT400049226	Potato	cytosol	51.71	62.05
PGSC0003DMT400030603	Potato	cytosol	38.89	47.15
PGSC0003DMT400078008	Potato	cytosol	30.77	46.75
PGSC0003DMT400078202	Potato	cytosol	29.91	45.45
PGSC0003DMT400078201	Potato	cytosol	29.49	44.81
PGSC0003DMT400078006	Potato	cytosol	29.06	44.16
VIT_13s0019g03170.t01	Wine grape	cytosol	29.91	44.03
GSMUA_Achr9P03540_001	Banana	cytosol	29.91	43.75
GSMUA_Achr6P33860_001	Banana	cytosol	30.77	43.64
PGSC0003DMT400078007	Potato	cytosol	28.63	43.51
PGSC0003DMT400038705	Potato	cytosol	24.36	42.86
PGSC0003DMT400030387	Potato	cytosol	28.21	42.86
PGSC0003DMT400030386	Potato	cytosol	28.63	42.68
PGSC0003DMT400007587	Potato	cytosol	27.35	41.29
PGSC0003DMT400030382	Potato	cytosol	26.92	40.91
PGSC0003DMT400030385	Potato	cytosol	28.21	40.24
PGSC0003DMT400089913	Potato	cytosol	26.07	39.87
PGSC0003DMT400030381	Potato	mitochondrion	20.09	38.21
GSMUA_Achr7P14910_001	Banana	cytosol	27.35	38.1
GSMUA_Achr8P00290_001	Banana	cytosol	23.5	37.93
PGSC0003DMT400044066	Potato	cytosol	20.94	35.0
PGSC0003DMT400088908	Potato	cytosol	14.96	33.65
KRH00090	Soybean	cytosol	23.5	32.16
KRH49235	Soybean	cytosol	21.37	32.05
PGSC0003DMT400032851	Potato	cytosol	19.23	31.91
PGSC0003DMT400060736	Potato	mitochondrion	19.23	31.03
EES02533	Sorghum	cytosol	21.79	30.91
Os01t0135900-02	Rice	plasma membrane	21.79	30.72
TraesCS3A01G035400.1	Wheat	cytosol	21.37	30.3
PGSC0003DMT400079950	Potato	cytosol	21.79	30.18
Zm00001d039941_P001	Maize	cytosol	21.37	30.12
HORVU3Hr1G006930.1	Barley	cytosol	20.94	29.7
TraesCS3B01G048800.1	Wheat	cytosol	20.94	29.7
TraesCS3B01G048700.1	Wheat	cytosol	20.51	29.27
KRH62434	Soybean	cytosol	17.52	26.11
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	19.23	23.56
TraesCS3A01G035500.1	Wheat	mitochondrion, plastid	20.94	23.56
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	18.38	22.51
PGSC0003DMT400023932	Potato	endoplasmic reticulum	17.95	21.32
HORVU3Hr1G006940.2	Barley	cytosol	19.23	18.52

Protein Annotations

EntrezGene:102593021	Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	UniProt:M1BNG0	PFAM:PF00011	EnsemblPlantsGene:PGSC0003DMG400019136	PGSC:PGSC0003DMG400019136
EnsemblPlants:PGSC0003DMT400049225	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF184	SUPFAM:SSF49764	UniParc:UPI0002948B54
RefSeq:XP_006349483.2	SEG:seg	:	:	:	:

Description

18.1 kDa class I heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019136]

Coordinates

chr10:+:50699792..50700705

Molecular Weight (calculated)

27298.3 Da

IEP (calculated)

10.071

GRAVY (calculated)

-0.858

Length

234 amino acids

Sequence
(BLAST)

001: MSLIPLFNGR KNHSRRVQNS PPATIITPQS QKNHDRSDSY DPTTTIMHRQ FKTNRSDEQD LYNYPPPTTN QDLHHLFNQL STTRITRQSQ TIRGQKDSYD
101: PSHKFYLETP RSLIAPSLSF PHVTPYLAQF EYNVTPEAYV FRANLHGYKK EEVKVQVEDD RVLKISGEKK IVEKEYDTWH HFQKKNGKFS TVFNLPEDAR
201: VDKVISTMDN EVLIVTIPKK GAVKKSHVRT VRIF

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.