Factsheet for PGSC0003DMT400088908

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030387	Potato	cytosol	73.08	49.35
PGSC0003DMT400030386	Potato	cytosol	72.12	47.77
PGSC0003DMT400030382	Potato	cytosol	70.19	47.4
PGSC0003DMT400030385	Potato	cytosol	74.04	46.95
PGSC0003DMT400007587	Potato	cytosol	67.31	45.16
PGSC0003DMT400089913	Potato	cytosol	63.46	43.14
TraesCS4B01G211700.1	Wheat	cytosol	49.04	41.13
VIT_13s0019g03090.t01	Wine grape	cytosol	61.54	40.0
VIT_13s0019g03160.t01	Wine grape	cytosol	60.58	39.38
GSMUA_Achr5P17640_001	Banana	cytosol	33.65	39.33
GSMUA_Achr9P00510_001	Banana	cytosol	57.69	38.22
GSMUA_Achr1P21160_001	Banana	cytosol	56.73	37.82
VIT_13s0019g02920.t01	Wine grape	cytosol	47.12	36.03
VIT_13s0019g03030.t01	Wine grape	cytosol	36.54	35.19
PGSC0003DMT400078201	Potato	cytosol	50.96	34.42
PGSC0003DMT400078008	Potato	cytosol	50.96	34.42
VIT_13s0019g02900.t01	Wine grape	cytosol	35.58	34.26
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	47.12	34.03
PGSC0003DMT400078006	Potato	cytosol	50.0	33.77
PGSC0003DMT400078202	Potato	cytosol	50.0	33.77
PGSC0003DMT400078007	Potato	cytosol	49.04	33.12
PGSC0003DMT400038705	Potato	cytosol	42.31	33.08
PGSC0003DMT400030381	Potato	mitochondrion	37.5	31.71
PGSC0003DMT400044066	Potato	cytosol	38.46	28.57
VIT_13s0019g03050.t01	Wine grape	cytosol	45.19	28.48
PGSC0003DMT400079950	Potato	cytosol	37.5	23.08
PGSC0003DMT400032851	Potato	cytosol	30.77	22.7
PGSC0003DMT400060736	Potato	mitochondrion	27.88	20.0
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	33.65	18.32
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	32.69	17.8
PGSC0003DMT400030603	Potato	cytosol	32.69	17.62
PGSC0003DMT400049226	Potato	cytosol	32.69	17.44
PGSC0003DMT400023932	Potato	endoplasmic reticulum	31.73	16.75
PGSC0003DMT400049225	Potato	mitochondrion	33.65	14.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400088908	EnsemblPlantsGene:PGSC0003DMG400038479	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011	PFscan:PS01031
PGSC:PGSC0003DMG400038479	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000296196B	UniProt:M1DH04	MapMan:35.1

Description

Chloroplast small heat shock protein class I [Source:PGSC_GENE;Acc:PGSC0003DMG400038479]

Coordinates

chr9:-:11625142..11625456

Molecular Weight (calculated)

11956.0 Da

IEP (calculated)

4.748

GRAVY (calculated)

-0.512

Length

104 amino acids

Sequence
(BLAST)

001: MWNIVEASYC SYLKSIYVSN IFDPFSLDLW DPFPISTNAP SSAREVSAFA NAKLDWKETP KAHFFKVDVP GIKKEEVKVK VEVEEGRILQ ISGERSREQE
101: EKND

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.