Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400018802 | |
PGSC0003DMT400076768 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G07400.1 | PGSC0003DMT400018802 | AT4G02150.1 | 21798944 |
AT1G07400.1 | PGSC0003DMT400076768 | AT4G02150.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400078006 | Potato | cytosol | 94.74 | 81.82 |
PGSC0003DMT400078008 | Potato | cytosol | 92.48 | 79.87 |
PGSC0003DMT400078007 | Potato | cytosol | 92.48 | 79.87 |
PGSC0003DMT400078201 | Potato | cytosol | 90.23 | 77.92 |
PGSC0003DMT400078202 | Potato | cytosol | 89.47 | 77.27 |
KRH50105 | Soybean | cytosol | 81.95 | 71.24 |
KRH50107 | Soybean | cytosol | 81.2 | 70.59 |
KRH50109 | Soybean | cytosol | 79.7 | 69.28 |
KRH42102 | Soybean | cytosol | 79.7 | 69.28 |
KRH53964 | Soybean | cytosol | 77.44 | 68.67 |
KRH42103 | Soybean | cytosol | 78.2 | 67.97 |
KRH20397 | Soybean | cytosol | 78.2 | 67.53 |
KRH20402 | Soybean | cytosol | 78.2 | 67.53 |
KRH42105 | Soybean | cytosol | 77.44 | 67.32 |
KRH50102 | Soybean | cytosol | 77.44 | 67.32 |
KRH20400 | Soybean | cytosol | 76.69 | 66.23 |
AT2G29500.1 | Thale cress | cytosol | 75.94 | 66.01 |
KRH50104 | Soybean | endoplasmic reticulum | 79.7 | 65.84 |
KRH20405 | Soybean | cytosol | 75.19 | 65.79 |
CDY51363 | Canola | cytosol | 73.68 | 64.47 |
KRH20403 | Soybean | cytosol | 77.44 | 63.98 |
KRH57663 | Soybean | cytosol | 64.66 | 63.24 |
AT1G59860.1 | Thale cress | cytosol | 73.68 | 63.23 |
AT1G07400.1 | Thale cress | cytosol | 74.44 | 63.06 |
CDY45448 | Canola | cytosol | 73.68 | 62.82 |
CDX97881 | Canola | cytosol | 72.18 | 62.75 |
KRH63973 | Soybean | cytosol | 66.17 | 62.41 |
CDY53371 | Canola | cytosol | 72.93 | 62.18 |
Bra018383.1-P | Field mustard | cytosol | 72.93 | 62.18 |
PGSC0003DMT400030381 | Potato | mitochondrion | 52.63 | 56.91 |
CDY53372 | Canola | cytosol, plastid | 66.17 | 56.77 |
PGSC0003DMT400089913 | Potato | cytosol | 64.66 | 56.21 |
PGSC0003DMT400007587 | Potato | cytosol | 65.41 | 56.13 |
PGSC0003DMT400030386 | Potato | cytosol | 65.41 | 55.41 |
Bra018384.1-P | Field mustard | cytosol | 66.17 | 55.35 |
Bra031725.1-P | Field mustard | cytosol | 66.17 | 55.35 |
PGSC0003DMT400030382 | Potato | cytosol | 63.91 | 55.19 |
CDY45447 | Canola | cytosol | 65.41 | 54.72 |
PGSC0003DMT400030387 | Potato | cytosol | 63.16 | 54.55 |
PGSC0003DMT400044066 | Potato | cytosol | 57.14 | 54.29 |
PGSC0003DMT400030385 | Potato | cytosol | 63.91 | 51.83 |
PGSC0003DMT400032851 | Potato | cytosol | 50.38 | 47.52 |
PGSC0003DMT400088908 | Potato | cytosol | 33.08 | 42.31 |
PGSC0003DMT400079950 | Potato | cytosol | 47.37 | 37.28 |
PGSC0003DMT400060736 | Potato | mitochondrion | 35.34 | 32.41 |
PGSC0003DMT400023932 | Potato | endoplasmic reticulum | 45.86 | 30.96 |
PGSC0003DMT400062882 | Potato | endoplasmic reticulum, golgi | 43.61 | 30.37 |
PGSC0003DMT400030603 | Potato | cytosol | 43.61 | 30.05 |
PGSC0003DMT400053402 | Potato | endoplasmic reticulum, extracellular | 42.11 | 29.32 |
PGSC0003DMT400049226 | Potato | cytosol | 42.11 | 28.72 |
PGSC0003DMT400049225 | Potato | mitochondrion | 42.86 | 24.36 |
Protein Annotations
EntrezGene:102598100 | MapMan:19.1.8.1 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
InterPro:IPR002068 | InterPro:IPR008978 | UniProt:M1B796 | PFAM:PF00011 | EnsemblPlantsGene:PGSC0003DMG400014956 | PGSC:PGSC0003DMG400014956 |
EnsemblPlants:PGSC0003DMT400038705 | PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF251 | SUPFAM:SSF49764 | UniParc:UPI0002959ACA |
RefSeq:XP_006340020.1 | SEG:seg | : | : | : | : |
Description
17.6 kD class I small heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014956]
Coordinates
chr9:+:31436185..31436781
Molecular Weight (calculated)
15335.3 Da
IEP (calculated)
6.561
GRAVY (calculated)
-0.824
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFNSFKEL GFPISNSGET SAFANTRVDW KETPEAHVFK ADLPGLKKEE VKVEIEEDRV LQISGERNLE KEDKNDKWHR VERSSGKFMK RFRLPENAKM
101: DQVKASMENR VLTVIVPKEE VKKPDVKSIE ISG
101: DQVKASMENR VLTVIVPKEE VKKPDVKSIE ISG
001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
Arabidopsis Description
HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.