Factsheet for PGSC0003DMT400018802

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000462
PGSC0003DMT400006800
PGSC0003DMT400020463
PGSC0003DMT400023040
PGSC0003DMT400023680
PGSC0003DMT400026584
PGSC0003DMT400042572
PGSC0003DMT400043112
PGSC0003DMT400046599
PGSC0003DMT400050810
PGSC0003DMT400051236
PGSC0003DMT400054832
PGSC0003DMT400055730
PGSC0003DMT400064306
PGSC0003DMT400067640
PGSC0003DMT400073689

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02150.1	PGSC0003DMT400054832	AT1G06510.1	21798944
AT4G02150.1	PGSC0003DMT400073689	AT1G52560.1	21798944
AT4G02150.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT4G02150.1	PGSC0003DMT400020463	AT2G24020.1	21798944
AT4G02150.1	PGSC0003DMT400000462	AT2G45820.1	21798944
AT4G02150.1	PGSC0003DMT400026584	AT2G45820.1	21798944
AT4G02150.1	PGSC0003DMT400055730	AT2G45820.1	21798944
AT4G02150.1	PGSC0003DMT400006800	AT3G15540.1	21798944
AT4G02150.1	PGSC0003DMT400042572	AT3G15540.1	21798944
AT4G02150.1	PGSC0003DMT400023680	AT3G21215.1	21798944
AT4G02150.1	PGSC0003DMT400046599	AT3G48550.1	21798944
AT4G02150.1	PGSC0003DMT400023040	AT4G15900.1	9765207
AT4G02150.1	PGSC0003DMT400043112	AT4G22240.1	21798944
AT4G02150.1	PGSC0003DMT400067640	AT4G24840.1	21798944
AT4G02150.1	PGSC0003DMT400050810	AT5G47810.1	21798944
AT4G02150.1	PGSC0003DMT400051236	AT5G57120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009750.2.1	Tomato	nucleus	98.86	98.86
VIT_07s0005g01100.t01	Wine grape	cytosol	82.54	82.23
PGSC0003DMT400038784	Potato	cytosol	80.46	80.15
Os01t0253300-01	Rice	cytosol	79.51	79.66
PGSC0003DMT400076860	Potato	cytosol	79.89	79.58
TraesCS3D01G178500.1	Wheat	cytosol	78.37	78.82
TraesCS3A01G172000.1	Wheat	golgi, nucleus	78.37	78.82
KXG32187	Sorghum	cytosol	78.94	78.79
Zm00001d040274_P001	Maize	cytosol	78.94	78.64
Zm00001d008345_P003	Maize	cytosol	78.75	78.3
HORVU3Hr1G034750.5	Barley	cytosol	78.18	77.3
TraesCS3B01G202800.2	Wheat	cytosol	75.9	74.49
CDY01921	Canola	cytosol	72.3	71.75
AT4G02150.1	Thale cress	cytosol	72.3	71.75
PGSC0003DMT400007130	Potato	cytosol	72.68	71.72
CDX97257	Canola	cytosol	71.92	71.37
Bra008559.1-P	Field mustard	cytosol	71.92	71.37
AT1G02690.2	Thale cress	cytosol	71.54	69.94
CDY64806	Canola	cytosol	66.79	67.95
CDX90948	Canola	cytosol	66.79	67.95
Bra033342.1-P	Field mustard	cytosol	67.17	67.95
CDX89948	Canola	cytosol	66.98	67.75
Bra000891.1-P	Field mustard	cytosol	66.41	67.57
CDY15260	Canola	cytosol	66.79	45.42
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	7.21	42.7
PGSC0003DMT400027134	Potato	cytosol	27.7	28.08

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:102596919	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606
GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha
UniProt:M1AB59	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	EnsemblPlantsGene:PGSC0003DMG400007289	PGSC:PGSC0003DMG400007289
EnsemblPlants:PGSC0003DMT400018802	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000296E2A3	RefSeq:XP_006355841.1	SEG:seg	:

Description

Importin subunit alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400007289]

Coordinates

chr6:-:100326..106781

Molecular Weight (calculated)

58596.9 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.206

Length

527 amino acids

Sequence
(BLAST)

001: MSLRPNSRTE ARRSRYKVAV DAEEGRRRRE DNMVEIRKNK REESLLKKRR EGLLQAQQFP STAAVSHLDK KLETLPELIA GVWSDDSSLQ LECTTQFRKL
101: LSIERNPPIE EVIQSGVVPR FVEFLARDDY PQLQFEAAWA LTNIASGTSE NTKVVIDYGA VPIFIRLLSS PSDDVREQAV WALGNIAGDS PKYRDLVLGH
201: GALVALLAQF NEQAKLSMLR NATWTLSNFC RGKPQPQFEQ TKAALPTLGR LIHSNDEEVL TDACWALSYL SDGTNDKIQA VIEAGVCSRL VELLLHSSPS
301: VLIPALRTVG NIVTGDDIQT QVMIDHHALP CLVNLLTQNY KKSIKKEACW TISNITAGNR NQIQIVIEAG IIAPLVYLLQ NAEFEIKKEA AWGISNATSG
401: GNHDQIKFLV SQGCIKPLCD LLVCPDPRIV TVCLEGLENI LKIGEADKDL GNTEGVNVYA QLIDEAEGLE KIENLQSHDN TEIYEKAVKI LETYWLEEED
501: VQVSLIEDQF EFGGADISLP SGGFNFS

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.