Factsheet for PGSC0003DMT400027134

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084270.1.1	Tomato	cytosol	97.88	97.88
VIT_08s0040g02290.t01	Wine grape	cytosol	77.5	77.95
KRH19830	Soybean	cytosol, plastid	73.85	74.27
CDY04878	Canola	plastid	72.31	72.17
CDY55698	Canola	cytosol, plastid	72.12	72.12
KRH32422	Soybean	plastid	27.69	71.64
AT5G03070.1	Thale cress	cytosol, plastid	71.15	71.29
Bra028852.1-P	Field mustard	cytosol	70.38	69.45
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	68.27	68.14
CDY10407	Canola	cytosol	62.5	65.79
CDX70330	Canola	cytosol, extracellular	32.69	65.13
Zm00001d008640_P002	Maize	plastid	63.85	63.12
Bra009550.1-P	Field mustard	plastid	35.19	62.67
HORVU3Hr1G025640.2	Barley	plastid	62.31	61.83
TraesCS3B01G152900.1	Wheat	plastid	62.12	61.64
Os01t0158000-01	Rice	cytosol	60.38	59.47
EES02429	Sorghum	plastid	63.85	58.76
TraesCS3D01G135500.2	Wheat	plastid	62.5	57.83
TraesCS3A01G309900.2	Wheat	plastid	62.31	57.65
PGSC0003DMT400076860	Potato	cytosol	29.81	29.3
PGSC0003DMT400007130	Potato	cytosol	29.23	28.46
PGSC0003DMT400038784	Potato	cytosol	28.85	28.36
PGSC0003DMT400018802	Potato	cytosol	28.08	27.7
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	2.31	13.48

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102578358	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006810
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR011989
InterPro:Importing_su_alpha	UniProt:M1AP87	PFAM:PF00514	EnsemblPlantsGene:PGSC0003DMG400010467	PGSC:PGSC0003DMG400010467	EnsemblPlants:PGSC0003DMT400027134
PIRSF:PIRSF005673	PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF1	SMART:SM00185	SUPFAM:SSF48371
UniParc:UPI0002951706	RefSeq:XP_006339060.1	SEG:seg	:	:	:

Description

Importin alpha-2 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400010467]

Coordinates

chr10:-:54815690..54824621

Molecular Weight (calculated)

56666.7 Da

IEP (calculated)

5.207

GRAVY (calculated)

0.049

Length

520 amino acids

Sequence
(BLAST)

001: MADEGLVSHK RDPIKASVGN AAAQRRRQHA VTVGKERREA LMRTKRLCRV GVSGDFDEAS IDDSDMMIEE DQAILEALTS AAVEELKLDV AYQGKGATEK
101: RVNALRELRR FLSRSEFPPV EAALQAGAIP LLIQCLSFGS PDEQLLEAAW CLTNIAAGKP EETKALLPAL PLLVAHLGEK SSLHVVEQCA WALGNVAGES
201: EELRNVLLLQ GALPALARML LPNKRSTVRT AAWALSNLIK GPDPRAATEL IKIDGIPDRI VRHLKKGDDE LATEVAWVVV YLTALSNVAT TILAKSDLVQ
301: VLVEILDMST SLQLLIPVLR SLGNLVAGEP HITNFVLVVR HALTGDAIQA LVKCLKSEHR ILNKEAAWVL SNIAAGSVEH KRLIYSSEAM PLLLNLLSKA
401: AFDIKKEVAY VLGNICVAPA EGSGRPNVIL DHLVNLVHGG CLTGFLDLVR SADVEAARLG LQFIELVLRG MPNGEGPKLV EREDGIDAME RYQFHENEEL
501: RSMANELVDS YFGEEYGLDE

Best Arabidopsis Sequence Match ( AT5G03070.1 )
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE

Arabidopsis Description

IMPA9Importin subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:F4KF65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.