Factsheet for VIT_08s0040g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19830	Soybean	cytosol, plastid	79.5	79.5
PGSC0003DMT400027134	Potato	cytosol	77.95	77.5
CDY55698	Canola	cytosol, plastid	77.76	77.31
CDY04878	Canola	plastid	77.76	77.16
AT5G03070.1	Thale cress	cytosol, plastid	76.98	76.69
Solyc10g084270.1.1	Tomato	cytosol	76.98	76.54
Bra028852.1-P	Field mustard	cytosol	76.4	74.95
KRH32422	Soybean	plastid	28.63	73.63
CDY10407	Canola	cytosol	68.86	72.06
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	71.95	71.4
CDX70330	Canola	cytosol, extracellular	35.59	70.5
Bra009550.1-P	Field mustard	plastid	38.3	67.81
Zm00001d008640_P002	Maize	plastid	68.86	67.68
TraesCS3B01G152900.1	Wheat	plastid	67.5	66.6
HORVU3Hr1G025640.2	Barley	plastid	67.12	66.22
Os01t0158000-01	Rice	cytosol	66.92	65.53
EES02429	Sorghum	plastid	68.28	62.48
TraesCS3D01G135500.2	Wheat	plastid	67.5	62.1
TraesCS3A01G309900.2	Wheat	plastid	67.31	61.92
VIT_05s0077g01430.t01	Wine grape	cytosol	31.14	30.43
VIT_07s0005g01100.t01	Wine grape	cytosol	30.56	29.87
VIT_14s0060g01510.t01	Wine grape	cytosol	30.17	29.6
VIT_14s0060g00930.t01	Wine grape	cytosol	30.37	29.35
VIT_15s0021g00390.t01	Wine grape	cytosol	2.9	27.78
VIT_00s0183g00040.t01	Wine grape	cytosol	8.12	26.58
VIT_00s0183g00210.t01	Wine grape	cytosol	11.8	20.89

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100261958	wikigene:100261958	MapMan:23.5.1.3	EMBL:AM469133	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CAN61727	ProteinID:CAN61727.1	ProteinID:CBI32701	ProteinID:CBI32701.3
UniProt:D7TQI1	EMBL:FN596008	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR011989	InterPro:Importing_su_alpha	EntrezGene:LOC100261958	wikigene:LOC100261958	PFAM:PF00514	PIRSF:PIRSF005673
PANTHER:PTHR23316	PANTHER:PTHR23316:SF1	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0001983D0A	ArrayExpress:VIT_08s0040g02290
EnsemblPlantsGene:VIT_08s0040g02290	EnsemblPlants:VIT_08s0040g02290.t01	unigene:Vvi.17678	RefSeq:XP_002279724	RefSeq:XP_002279724.1	SEG:seg

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:D7TQI1]

Coordinates

chr8:+:13391558..13401740

Molecular Weight (calculated)

55678.5 Da

IEP (calculated)

5.412

GRAVY (calculated)

0.050

Length

517 amino acids

Sequence
(BLAST)

001: MADDGLASHR RDPIKSSVGN VAANRRRQQA ITVGKERREA LVRTKRLCRV GISGDSDVPV DGDMMIDEEQ SILETQTSSA VEELKSTVIY QGKGAMQKRV
101: SALRDLRRLL SRSEFPPIEA ALKAGAVSVL VQCLSFGSPD EQLLEAAWCL TNIAAGKPEE TKALVPALPL LIAHLGEKSS PPVAEQCAWA LGNVAGEGEE
201: LRNILLSQGA LPPLARMMVP NKGSTVRTAA WALSNLIKGP DPKAASELIQ IDGVLDAILR HLRKGDEELA TEVAWVVVYL SALSDTATSI LVKSNLLQLL
301: VERLATSNSL QLLIPVLRSL GNLGAGASHA TCILVVGHEM TDNFIAALVK CLGSEHRVLK KEAAWVLSNI AAGSIEHKKL IYSSEAVPLL LRLLSTAPFD
401: IRKEVAYALG NLCVVSSEGG GKPALILEHL VSLVGRGCLL GFIDLVRSAD TEAAKLGLQF MELVLRGMPN GEGPKLVERE DGIDAMERFQ FHENEDLRNM
501: ANGLVDTYFG EEYGLDE

Best Arabidopsis Sequence Match ( AT5G03070.1 )
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE

Arabidopsis Description

IMPA9Importin subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:F4KF65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.