Factsheet for VIT_05s0077g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11998	Soybean	endoplasmic reticulum	92.44	92.09
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	92.25	91.9
KRH50772	Soybean	cytosol, endoplasmic reticulum	78.26	91.39
KRH02317	Soybean	cytosol	91.49	91.32
VIT_14s0060g01510.t01	Wine grape	cytosol	90.36	90.7
Solyc01g060470.2.1	Tomato	extracellular	89.6	89.43
PGSC0003DMT400038784	Potato	cytosol	89.41	89.41
VIT_07s0005g01100.t01	Wine grape	cytosol	87.33	87.33
AT4G16143.2	Thale cress	cytosol	87.71	86.73
Bra012741.1-P	Field mustard	cytosol	58.03	85.99
AT3G06720.2	Thale cress	cytosol	86.2	85.71
CDY09716	Canola	cytosol	86.58	85.61
CDY34430	Canola	cytosol	85.63	85.47
CDY32215	Canola	cytosol	85.44	85.28
Bra033534.1-P	Field mustard	cytosol	85.44	85.28
CDX90544	Canola	cytosol	86.58	84.81
CDY52043	Canola	cytosol	85.44	84.64
CDY22779	Canola	cytosol	85.26	84.46
Bra038043.1-P	Field mustard	cytosol	85.26	84.46
Bra012740.1-P	Field mustard	cytosol	24.01	80.38
VIT_14s0060g00930.t01	Wine grape	cytosol	76.94	76.07
VIT_00s0183g00040.t01	Wine grape	cytosol	21.93	73.42
Zm00001d042015_P001	Maize	cytosol	21.93	69.88
AT5G49310.1	Thale cress	cytosol	65.78	67.05
VIT_15s0021g00390.t01	Wine grape	cytosol	6.43	62.96
Zm00001d040153_P004	Maize	cytosol	20.79	60.11
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.96	52.49
VIT_00s0183g00210.t01	Wine grape	cytosol	27.41	49.66
Zm00001d024033_P002	Maize	plastid	14.93	36.41
VIT_08s0040g02290.t01	Wine grape	cytosol	30.43	31.14

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100248248	wikigene:100248248	MapMan:23.5.1.3	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ProteinID:CBI22923	ProteinID:CBI22923.3	UniProt:D7SY66
EMBL:FN595246	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EntrezGene:LOC100248248
wikigene:LOC100248248	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176
PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00015CBB52
ArrayExpress:VIT_05s0077g01430	EnsemblPlantsGene:VIT_05s0077g01430	EnsemblPlants:VIT_05s0077g01430.t01	RefSeq:XP_002275593	RefSeq:XP_002275593.1	RefSeq:XP_010649542.1

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:D7SY66]

Coordinates

chr5:+:1149155..1153341

Molecular Weight (calculated)

58141.3 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.236

Length

529 amino acids

Sequence
(BLAST)

001: MSLRPSARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQAQQFPA AAHASTVEKK LESLPSMVAG VWSDNSSLQL EATTQFRKLL
101: SIERSPPIEE VIQSGVVPRF VEFLVREDFP QLQFEAAWAL TNIASGTSEN TKVVIDHGAV PIFVKLLGSP SDDVREQAVW ALGNVAGDSP RCRDLVLGHG
201: ALIPLLAQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV KPALPALERL VHSSDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCPRLV ELLLHPSPSV
301: LIPALRTVGN IVTGDDIQTQ SIINHGALPC LLSLLTHNHK KSIKKEACWT ISNITAGNKE QIQAVIEAGV IAPLVHLLQT AEFDIKKEAA WAISNATSGG
401: THEQIKYLVS QGCIKPLCDL LVCPDPRIVT VCLEGLENIL KVGEAEKTLG NSGDVNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDE
501: TLPSGDGSQP GFQFGGNDVS VPSGGFNFS

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.