Factsheet for VIT_00s0183g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0183g00210.t01	Wine grape	cytosol	91.14	49.32
VIT_14s0060g01510.t01	Wine grape	cytosol	80.38	24.1
KXG32452	Sorghum	cytosol	56.96	23.75
VIT_07s0005g01100.t01	Wine grape	cytosol	74.05	22.12
VIT_05s0077g01430.t01	Wine grape	cytosol	73.42	21.93
VIT_14s0060g00930.t01	Wine grape	cytosol	69.62	20.56
Os01t0343200-01	Rice	cytosol	61.39	17.2
Bra030771.1-P	Field mustard	cytosol	44.94	16.32
VIT_15s0021g00390.t01	Wine grape	cytosol	3.8	11.11
VIT_08s0040g02290.t01	Wine grape	cytosol	26.58	8.12

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB59099
ProteinID:CCB59099.1	UniProt:F6HWN5	EMBL:FN596276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635
GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006607	GO:GO:0006810
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	InterPro:IPR000225	InterPro:IPR011989	PFAM:PF00514
PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF35	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000210A498
ArrayExpress:VIT_00s0183g00040	EnsemblPlantsGene:VIT_00s0183g00040	EnsemblPlants:VIT_00s0183g00040.t01	:	:	:

Description

No Description!

Coordinates

chrUn:+:8046417..8047153

Molecular Weight (calculated)

17223.0 Da

IEP (calculated)

6.742

GRAVY (calculated)

0.141

Length

158 amino acids

Sequence
(BLAST)

001: MKTLMLQTRT TVVDTATKPA LPALGRLIHS NDEDVLTDAC WALSYLSDGT NDKVQAVIEA GVYPRLVELL LYSSPSVLIP ALRMVGNIVT GDDMQTQCII
101: NHQALLCLLN PLTNNHNKSI KKEACWTISN ITASNKEQIR AVIEANIIGP LCSFASKC

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.