Factsheet for VIT_00s0183g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0183g00040.t01	Wine grape	cytosol	49.32	91.14
VIT_14s0060g01510.t01	Wine grape	cytosol	52.4	29.03
VIT_07s0005g01100.t01	Wine grape	cytosol	50.0	27.6
VIT_05s0077g01430.t01	Wine grape	cytosol	49.66	27.41
KXG32452	Sorghum	cytosol	34.25	26.39
VIT_14s0060g00930.t01	Wine grape	cytosol	47.26	25.79
Os01t0343200-01	Rice	cytosol	41.44	21.45
Bra030771.1-P	Field mustard	cytosol	31.16	20.92
VIT_15s0021g00390.t01	Wine grape	cytosol	3.42	18.52
VIT_08s0040g02290.t01	Wine grape	cytosol	20.89	11.8

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB59108
ProteinID:CCB59108.1	UniProt:F6HWP4	EMBL:FN596276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635
GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006607	GO:GO:0006810
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	InterPro:IPR000225	InterPro:IPR011989	PFAM:PF00514
PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF35	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0002109C78
ArrayExpress:VIT_00s0183g00210	EnsemblPlantsGene:VIT_00s0183g00210	EnsemblPlants:VIT_00s0183g00210.t01	:	:	:

Description

No Description!

Coordinates

chrUn:-:8264805..8268129

Molecular Weight (calculated)

32265.6 Da

IEP (calculated)

6.693

GRAVY (calculated)

-0.150

Length

292 amino acids

Sequence
(BLAST)

001: MGGNEALAFD MGYARWLDEY QRLINDLRSV VNSHVGDNEL RILVDSNMAT CNAWSYDEHL IRAVICCGLY PGIVQNGKSF SLKTMEDGQV LWHSNSVNAR
101: ESHGELICWR EATFQALSAK GYPSDSAAYD DPSTNSQRLP IIMHKTQKLK TKPALPALGR LIHSNDEDVL TDACWALSYL SDGTNDKVQA VIEAGVCPRL
201: VELLLYSSPS VLIPALRMVG NIVTGDDMQT QCIINHQALR CLLNPLTNNH NKSIKKEACW TISNITASNK KQIRAVIEAN IIGPLCSFAS KC

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.