Factsheet for VIT_14s0060g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100720.2.1	Tomato	nucleus	88.41	88.58
PGSC0003DMT400007130	Potato	cytosol	88.22	88.39
CDX94988	Canola	cytosol	83.74	82.96
AT1G09270.1	Thale cress	cytosol	83.18	82.71
CDX93514	Canola	cytosol	83.74	82.66
CDY31102	Canola	plasma membrane	83.74	82.66
Bra018570.1-P	Field mustard	cytosol	83.55	82.47
CDY32165	Canola	cytosol	83.55	82.47
VIT_14s0060g01510.t01	Wine grape	cytosol	75.89	77.04
VIT_05s0077g01430.t01	Wine grape	cytosol	76.07	76.94
VIT_07s0005g01100.t01	Wine grape	cytosol	75.14	75.99
GSMUA_Achr8P22290_001	Banana	cytosol	76.45	74.23
VIT_00s0183g00040.t01	Wine grape	cytosol	20.56	69.62
KRG96699	Soybean	cytosol	54.77	60.54
Bra030765.1-P	Field mustard	cytosol	83.55	59.28
VIT_15s0021g00390.t01	Wine grape	cytosol	5.79	57.41
KRH68429	Soybean	cytosol, plastid	55.14	56.51
KRG99893	Soybean	cytosol	45.61	55.71
KRG99898	Soybean	cytosol	45.23	54.88
KRG99895	Soybean	cytosol, plastid	49.72	54.4
KRG99853	Soybean	cytosol, plastid	49.72	54.4
HORVU2Hr1G016300.1	Barley	cytosol	44.11	51.75
Os07t0688300-01	Rice	cytosol	44.49	51.52
KRG99088	Soybean	cytosol	42.06	50.56
KRG96700	Soybean	cytosol	46.36	48.92
VIT_00s0183g00210.t01	Wine grape	cytosol	25.79	47.26
KXG36990	Sorghum	cytosol	48.6	46.18
TraesCS2D01G096200.1	Wheat	cytosol	48.22	45.74
TraesCS2A01G097100.1	Wheat	cytosol	48.04	45.65
TraesCS2B01G112400.2	Wheat	cytosol	47.85	45.39
Zm00001d022536_P008	Maize	cytosol	48.04	45.25
VIT_08s0040g02290.t01	Wine grape	cytosol	29.35	30.37

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100263083	wikigene:100263083	MapMan:23.5.1.3	EMBL:AM430126
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ProteinID:CAN64716	ProteinID:CAN64716.1
ProteinID:CBI39614	ProteinID:CBI39614.3	UniProt:D7UA50	EMBL:FN596746	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606
GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB
InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EntrezGene:LOC100263083	wikigene:LOC100263083	PFAM:PF00514	PFAM:PF01749
PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22
SMART:SM00185	SUPFAM:SSF48371	TIGR:TC54013	TIGR:TC56073	UniParc:UPI00015C9EEB	ArrayExpress:VIT_14s0060g00930
EnsemblPlantsGene:VIT_14s0060g00930	EnsemblPlants:VIT_14s0060g00930.t01	unigene:Vvi.961	RefSeq:XP_002281670	RefSeq:XP_002281670.1	SEG:seg

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:D7UA50]

Coordinates

chr14:-:714282..726776

Molecular Weight (calculated)

59193.7 Da

IEP (calculated)

5.106

GRAVY (calculated)

-0.287

Length

535 amino acids

Sequence
(BLAST)

001: MSLRPGSRTD VRKKSYKTGV DAEEARRRRE DNLVEIRKNK REDNLLKKRR EGLILQSQQF SSDASQTTAV VEKRLESITL MVQGVWSDDP ASQLEATTQF
101: RKLLSIERSP PIDEVIKAGV VPRFVEFLGR HDLPQLQFEA AWALTNVASG TSEHTRVVIE HGAVPMFVQL LSSASDDVRE QAVWALGNVA GDSPSCRDLV
201: LGHGALMPLL SQLNEHSKLS MLRNATWTLS NFCRGKPPTP FEQVKPALPV LRQLIHLNDE EVLTDACWAL SYLSDGPNDK IQAVLEAGVC PRLVELLLHP
301: SPTVLIPALR TVGNIVTGDD AQTQFVIDNQ VLPCLYQLLT QNHKKSIKKE ACWTISNITA GNKGQIQAVI EANIILPLVN LLQHAEFDIK KEAAWGISNA
401: TSGGSHEQIQ FLVSQGCIKP LCDLLMCPDP RIVTVCLEGL ENILKVGEAD KESGKNGGIN LYAQMIDECD GLDKIELLQT HDNNEIYEKS VKLLERYWAE
501: EDEEVQNVQD GDGNQQGFGF GSSQPNLPPG GFKFG

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.