Factsheet for PGSC0003DMT400007130

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100720.2.1	Tomato	nucleus	97.38	97.38
VIT_14s0060g00930.t01	Wine grape	cytosol	88.39	88.22
CDX94988	Canola	cytosol	83.71	82.78
CDY31102	Canola	plasma membrane	83.9	82.66
CDX93514	Canola	cytosol	83.71	82.47
Bra018570.1-P	Field mustard	cytosol	83.52	82.29
CDY32165	Canola	cytosol	83.33	82.1
AT1G09270.1	Thale cress	cytosol	82.21	81.6
PGSC0003DMT400038784	Potato	cytosol	75.47	76.18
PGSC0003DMT400076860	Potato	cytosol	74.91	75.61
GSMUA_Achr8P22290_001	Banana	cytosol	75.66	73.32
PGSC0003DMT400018802	Potato	cytosol	71.72	72.68
KRG96699	Soybean	cytosol	53.75	59.3
Bra030765.1-P	Field mustard	cytosol	83.33	59.02
KRH68429	Soybean	cytosol, plastid	55.62	56.9
KRG99893	Soybean	cytosol	46.25	56.39
KRG99898	Soybean	cytosol	45.88	55.56
KRG99895	Soybean	cytosol, plastid	50.19	54.81
KRG99853	Soybean	cytosol, plastid	50.19	54.81
KRG99088	Soybean	cytosol	42.32	50.79
HORVU2Hr1G016300.1	Barley	cytosol	42.88	50.22
KRG96700	Soybean	cytosol	47.57	50.1
Os07t0688300-01	Rice	cytosol	43.07	49.78
TraesCS2A01G097100.1	Wheat	cytosol	47.57	45.12
TraesCS2D01G096200.1	Wheat	cytosol	47.57	45.04
TraesCS2B01G112400.2	Wheat	cytosol	47.19	44.68
KXG36990	Sorghum	cytosol	46.82	44.41
Zm00001d022536_P008	Maize	cytosol	46.25	43.49
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.74	40.45
PGSC0003DMT400027134	Potato	cytosol	28.46	29.23

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:102577776	MapMan:23.5.1.3	ProteinID:ABB55384	ProteinID:ABB55384.1
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EMBL:DQ252507	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:M0ZSI1	PFAM:PF00514	PFAM:PF01749
PFAM:PF16186	EnsemblPlantsGene:PGSC0003DMG400002759	PGSC:PGSC0003DMG400002759	EnsemblPlants:PGSC0003DMT400007130	PIRSF:PIRSF005673	PFscan:PS50176
PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000294989F
RefSeq:XP_006344784.1	SEG:seg	:	:	:	:

Description

Importin alpha 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002759]

Coordinates

chr1:-:78361337..78378418

Molecular Weight (calculated)

59075.5 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.288

Length

534 amino acids

Sequence
(BLAST)

001: MSLRPSNRTE VRKKSYKIGV DADEARRRRE DNLVEIRKNK REDNLLKKRR EGLLLHSQQL PDATQTPDAI EKRLESIPIM VQGVWSEDPA AQIEATTHFR
101: KLLSIERSPP IDEVIKAGVI PRFVEFLGRQ DLPQLQFEAA WALTNVASGT SEHTRVVIDH GAVPMFVQLL SSTSDDVREQ AIWALGNVAG DSPSCRDLVL
201: SQGALMPLLA QLNEHSKLSM LRNATWTLSN FCRGKPPTPF EAVKPALPVL QQLIHMNDEE VLTDACWALS YLSDGPNDKI QAVIDAGVCP RLVELLLHPS
301: PTVLIPALRT AGNIVTGDDA QTQFVIDNQV LPCLYQLLTQ NHKKSIKKEA CWTISNITAG NRAQIQAVIE ANIILPMVHL LQNAEFDIKK EAAWAISNAT
401: SGGSNDQIRF LASQGCIKPL CDLLICPDPR IVTVCLEGLE NILKVGEVDK EAGANGGINL YAQTIDECDG LDKIENLQTH DNNELYEKAV KILEKYWAEE
501: DEEQNLPDGA DGNQQGFQFG NNQPNVPAGG FKFG

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.