CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68429	Soybean	cytosol, plastid	52.66	51.15
KRG96699	Soybean	cytosol	48.13	50.41
PGSC0003DMT400007130	Potato	cytosol	50.1	47.57
Solyc01g100720.2.1	Tomato	nucleus	49.51	47.0
VIT_14s0060g00930.t01	Wine grape	cytosol	48.92	46.36
KRG99893	Soybean	cytosol	39.65	45.89
KRG99898	Soybean	cytosol	39.45	45.35
Bra018570.1-P	Field mustard	cytosol	47.34	44.28
CDX93514	Canola	cytosol	47.14	44.1
KRH50772	Soybean	cytosol, endoplasmic reticulum	39.25	43.93
CDX94988	Canola	cytosol	46.75	43.89
AT1G09270.1	Thale cress	cytosol	46.15	43.49
CDY31102	Canola	plasma membrane	46.35	43.36
KRG99853	Soybean	cytosol, plastid	41.81	43.35
KRG99895	Soybean	cytosol, plastid	41.81	43.35
CDY32165	Canola	cytosol	45.96	42.99
KRG99088	Soybean	cytosol	37.08	42.25
KRG92948	Soybean	nucleus	43.98	41.92
KRH33847	Soybean	nucleus	43.98	41.92
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	43.0	41.05
KRH11998	Soybean	endoplasmic reticulum	42.8	40.87
KRH02317	Soybean	cytosol	42.41	40.57
KRG96743	Soybean	nucleus	42.21	40.23
KRH68461	Soybean	nucleus	42.01	40.04
GSMUA_Achr5P27180_001	Banana	cytosol	34.12	37.37
Os07t0688300-01	Rice	cytosol	31.56	34.63
HORVU2Hr1G016300.1	Barley	cytosol	30.97	34.43
KXG36990	Sorghum	cytosol	35.11	31.62
Bra030765.1-P	Field mustard	cytosol	46.35	31.17
Zm00001d022536_P008	Maize	cytosol	34.32	30.63
TraesCS2D01G096200.1	Wheat	cytosol	33.92	30.5
TraesCS2A01G097100.1	Wheat	cytosol	33.73	30.37
TraesCS2B01G112400.2	Wheat	cytosol	33.53	30.14
KRH19830	Soybean	cytosol, plastid	20.12	19.73
KRH32422	Soybean	plastid	6.31	15.92

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100793734	MapMan:23.5.1.3	EMBL:ACUP02012162	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlantsGene:GLYMA_19G227200	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR011989	InterPro:Importing_su_alpha	UniProt:K7MZT0	EnsemblPlants:KRG96700	ProteinID:KRG96700	ProteinID:KRG96700.1
PFAM:PF00514	PIRSF:PIRSF005673	PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF17	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0002964F7E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:47875434..47878914

Molecular Weight (calculated)

56078.3 Da

IEP (calculated)

4.506

GRAVY (calculated)

-0.123

Length

507 amino acids

Sequence
(BLAST)

001: MSERTGSGSG SDRTKRSNTS GVEPHESRRR KEENLIGVRR QKRARLRYPT LTAIPKLLQS LCSEYPALES QITSHLNTLL ALDDQIPLID DVLKDVVLPR
101: FVKFLDDEKE PQFQLEALWV LTNFAEASSK HTKVVLEVGV IPRIVSILKY NSEVEILEQA IYALGLIADY SPSYRDRALS NGSLRPLLSL VESLPGSSML
201: IARTLCSLVQ GKPPVNFQRV KNALPVLQKL IHTANEEVVS DACWALYHLS EGPEDQIQAI IEAGVCPKLV ELLQHSSVAV ISPALQTLGN IVTGDNAQKQ
301: IVVDNQVLPG LYQLLMRGNR KSIRIEACLA ISNITSGNEA QIEAVLKANI IPQLVQILQQ DELDIKSEAA WAIYNATAGG SHDNIRLLAD QGCIKALCDI
401: LTCPDLTVVS VSLEGLENIL KVVGEAAKEM VCGCEGLDKI QNLLTLTMEC DENEDDENED ENEHEEKLEV FEIAHRILKT FWPELGLEEN ELENPLDGSL
501: PFEVTNT

Best Arabidopsis Sequence Match ( AT1G09270.1 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.