CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92948	Soybean	nucleus	99.25	99.25
VIT_14s0060g01510.t01	Wine grape	cytosol	90.23	91.08
KRH68461	Soybean	nucleus	90.79	90.79
KRG96743	Soybean	nucleus	90.79	90.79
KRH50772	Soybean	cytosol, endoplasmic reticulum	76.13	89.4
KRH11998	Soybean	endoplasmic reticulum	88.35	88.51
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	87.78	87.95
KRH02317	Soybean	cytosol	87.59	87.92
GSMUA_Achr8P06540_001	Banana	cytosol	85.9	86.06
GSMUA_Achr3P24150_001	Banana	cytosol	85.71	86.04
GSMUA_Achr1P14770_001	Banana	cytosol	84.59	85.23
Os05t0155601-00	Rice	nucleus	82.14	81.84
GSMUA_Achr5P27090_001	Banana	cytosol	83.65	81.65
TraesCS1D01G106200.1	Wheat	cytosol	81.39	81.09
TraesCS1B01G126500.1	Wheat	cytosol	81.39	81.09
TraesCS1A01G097400.1	Wheat	nucleus	81.39	81.09
EES19061	Sorghum	cytosol	80.26	80.57
Zm00001d037606_P001	Maize	cytosol	79.89	80.49
HORVU1Hr1G022750.2	Barley	plasma membrane	81.2	76.6
Zm00001d009850_P002	Maize	cytosol	79.7	73.61
KRG96699	Soybean	cytosol	50.56	55.58
KRG99893	Soybean	cytosol	44.36	53.88
KRG99898	Soybean	cytosol	44.17	53.29
KRH68429	Soybean	cytosol, plastid	51.13	52.11
KRG99853	Soybean	cytosol, plastid	47.37	51.53
KRG99895	Soybean	cytosol, plastid	47.37	51.53
KRG99088	Soybean	cytosol	39.47	47.19
KRG96700	Soybean	cytosol	41.92	43.98
KRH19830	Soybean	cytosol, plastid	27.82	28.63
KRH32422	Soybean	plastid	10.34	27.36

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100789135	MapMan:23.5.1.3	EMBL:ACUP02006559	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_10G148800	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606
GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	UniProt:I1LB65	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EnsemblPlants:KRH33847	ProteinID:KRH33847	ProteinID:KRH33847.1
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000233C935	:

Description

hypothetical protein

Coordinates

chr10:+:38420217..38425350

Molecular Weight (calculated)

59003.4 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.285

Length

532 amino acids

Sequence
(BLAST)

001: MSYRPSGNSR TEVRRNRYKV AVDAEEGRRR REDTMVEIRK NRREESLQKK RREGLQPQQM PASVHSSLVE KKLEHLPSMV TGVWTDDNNL QLEATTQFRK
101: LLSIERSPPI EEVIQTGVVS RFVEFLMRED FPQLQFEAAW ALTNIASGTS ENTKVVIDHG AVPIFVKLLA SPSDDVREQA VWALGNVAGD SPRCRDLVLS
201: HGALLPLLAQ LNEHAKLSML RNATWTLSNF CRGKPQPPFD QVKPALPALA RLIHSNDEEV LTDACWALSY LSDGTNDKIQ AVIEAGVCPR LVELLLHPSP
301: SVLIPALRTV GNIVTGDDMQ TQVIINHQAL PCLLNLLTNN YKKSIKKEAC WTISNITAGN KQQIQAVIEA NLIAPLVNLL QNAEFDIKKE AAWAISNATS
401: GGSHEQIKFL VSQGCIKPLC DLLICPDPRI VTVCLEGLEN ILKVGEADKN IGNTGDVNLY AQMIDEAEGL EKIENLQSHD NTEIYEKAVK ILETYWLEEE
501: DETMPPGDAS QSGFNFGSSD APTVPSGGFN FN

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.