Factsheet for GSMUA_Achr3P24150_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P06540_001	Banana	cytosol	95.09	94.92
GSMUA_Achr1P14770_001	Banana	cytosol	90.19	90.53
GSMUA_Achr5P27090_001	Banana	cytosol	90.38	87.89
VIT_14s0060g01510.t01	Wine grape	cytosol	86.98	87.48
KRH33847	Soybean	nucleus	86.04	85.71
KRG92948	Soybean	nucleus	85.66	85.34
Os05t0155601-00	Rice	nucleus	84.91	84.27
KRG96743	Soybean	nucleus	83.77	83.46
KRH68461	Soybean	nucleus	83.4	83.08
TraesCS1D01G106200.1	Wheat	cytosol	83.21	82.58
TraesCS1B01G126500.1	Wheat	cytosol	83.21	82.58
TraesCS1A01G097400.1	Wheat	nucleus	83.21	82.58
Zm00001d037606_P001	Maize	cytosol	81.89	82.2
EES19061	Sorghum	cytosol	81.89	81.89
HORVU1Hr1G022750.2	Barley	plasma membrane	83.02	78.01
Zm00001d009850_P002	Maize	cytosol	80.94	74.48
GSMUA_Achr8P22290_001	Banana	cytosol	72.45	69.69
GSMUA_Achr5P27180_001	Banana	cytosol	49.43	56.59
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	28.68	29.17

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:GSMUA_Achr3G24150_001	EnsemblPlants:GSMUA_Achr3P24150_001
EnsemblPlants:GSMUA_Achr3T24150_001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB
InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:M0SHD1	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF35	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000295B3B4	SEG:seg	:	:	:

Description

Importin subunit alpha-1b [Source:GMGC_GENE;Acc:GSMUA_Achr3G24150_001]

Coordinates

chr3:+:24778540..24784289

Molecular Weight (calculated)

58447.7 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.275

Length

530 amino acids

Sequence
(BLAST)

001: MSLRPSERAE VRRNKYKVAV DAEEGRRRRE DNMVEIRKNR REESLQKKRR EGMQAQPLPQ TATHASVIEK KLESLPAMVA GVYSDDSTLQ LEATTQFRKL
101: LSIERSPPIE EVIQSGVVPR FVEFLTREDY PQLQFEAAWA LTNIASGTSE NTKVVIDHGA VPIFVKLLSS PSDDVREQAV WALGNVAGDS PRCRDLVLGN
201: GALFPLLQQL NEHAKLSMLR NATWTLSNFC RGKPQPAFEQ VKPALPALER LIHSSDEEVL TDACWALSYL SDGTNDKIQA VLEAGVCPRL VELLLHPSPS
301: VLIPALRTVG NIVTGDDVQT QYVINHQALP CLLNLLTHNH KKSIKKEACW TISNITAGNK EQIQAVIAAG IIGPLVHLLQ TAEFDIKKEA AWAISNATSG
401: GNHDQIKYLV SQGCVKPLCD LLVCPDPRIV TVCLEGLENI LKVGEAEKNL GASGDVNLYA QMIEEAEGLE KIENLQSHDN TEIYEKAVKI LETYWLEEDD
501: AMPTGDAAQT GFHFGNNGQN TAPPGGFNFG

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.