CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96743	Soybean	nucleus	97.18	97.18
KRG92948	Soybean	nucleus	91.17	91.17
KRH33847	Soybean	nucleus	90.79	90.79
VIT_14s0060g01510.t01	Wine grape	cytosol	87.22	88.05
KRH11998	Soybean	endoplasmic reticulum	85.53	85.69
KRH02317	Soybean	cytosol	85.15	85.47
KRH50772	Soybean	cytosol, endoplasmic reticulum	72.56	85.21
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	84.96	85.12
GSMUA_Achr3P24150_001	Banana	cytosol	83.08	83.4
GSMUA_Achr8P06540_001	Banana	cytosol	83.08	83.24
GSMUA_Achr1P14770_001	Banana	cytosol	81.95	82.58
Os05t0155601-00	Rice	nucleus	79.7	79.4
GSMUA_Achr5P27090_001	Banana	cytosol	81.2	79.27
TraesCS1D01G106200.1	Wheat	cytosol	78.57	78.28
TraesCS1B01G126500.1	Wheat	cytosol	78.57	78.28
TraesCS1A01G097400.1	Wheat	nucleus	78.57	78.28
Zm00001d037606_P001	Maize	cytosol	77.07	77.65
EES19061	Sorghum	cytosol	77.07	77.36
HORVU1Hr1G022750.2	Barley	plasma membrane	78.38	73.94
Zm00001d009850_P002	Maize	cytosol	76.69	70.83
KRG99893	Soybean	cytosol	43.98	53.42
KRG96699	Soybean	cytosol	47.93	52.69
KRG99898	Soybean	cytosol	43.61	52.61
KRH68429	Soybean	cytosol, plastid	50.38	51.34
KRG99853	Soybean	cytosol, plastid	46.62	50.72
KRG99895	Soybean	cytosol, plastid	46.62	50.72
KRG99088	Soybean	cytosol	38.72	46.29
KRG96700	Soybean	cytosol	40.04	42.01
KRH19830	Soybean	cytosol, plastid	28.38	29.21
KRH32422	Soybean	plastid	10.71	28.36

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100798125	MapMan:23.5.1.3	EMBL:ACUP02002116	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_03G232800	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606
GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	UniProt:I1JR71	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EnsemblPlants:KRH68461	ProteinID:KRH68461	ProteinID:KRH68461.1
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000233A029	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:43372611..43378096

Molecular Weight (calculated)

58850.2 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.268

Length

532 amino acids

Sequence
(BLAST)

001: MSYRPSANAR TEVRRNRYKV AVDADEGRRR REDTMVEIRK SRREESLQKK RREGLQSQQI PSSLHSTVIE KKLEHLPAMV TGVFTDDNNM QLEATTQFRK
101: LLSIERSPPI EEVIQAGVVP RFVDFLMRED FPQLQFEAAW ALTNIASGTS ENTKVIIDHG AVPIFVKLLG SPSDDVREQA VWALGNVAGD SPRCRDLVLG
201: HGALLPLLAQ LNEHAKLSML RNATWTLSNF CRGKPQPAFD QVKPALPALA SLIQSNDEEV LTDACWALSY LSDGTNDKIQ GVIEAGVCSR LVDLLLHPSP
301: SVLIPALRTV GNIVTGDDLQ TQVIINHQAL PRLLNILTNN YKKSIKKEAC WTISNITAGN KKQIQDVIEA SIIAPLVHLL QNAEFDIKKE AAWAISNATS
401: GGSHEQIKFL VSQGCIRPLC DLLICPDPRI VTVCLEGLEN ILKVGEAEKN VSNTDGVNLY AQMIDDAEGL EKIENLQSHD NTEIYEKAVK ILETYWMEED
501: DETMPPGDAS QSGFNFGGTQ PPAVPSGGFD FN

Best Arabidopsis Sequence Match ( AT1G02690.1 )
(BLAST)

001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG

Arabidopsis Description

IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.