Factsheet for Os05t0155601-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G126500.1	Wheat	cytosol	91.95	91.95
TraesCS1A01G097400.1	Wheat	nucleus	91.95	91.95
TraesCS1D01G106200.1	Wheat	cytosol	91.76	91.76
Zm00001d037606_P001	Maize	cytosol	89.89	90.91
EES19061	Sorghum	cytosol	89.89	90.57
HORVU1Hr1G022750.2	Barley	plasma membrane	91.57	86.7
GSMUA_Achr8P06540_001	Banana	cytosol	84.46	84.93
GSMUA_Achr3P24150_001	Banana	cytosol	84.27	84.91
GSMUA_Achr1P14770_001	Banana	cytosol	83.15	84.09
VIT_14s0060g01510.t01	Wine grape	cytosol	82.4	83.49
Zm00001d009850_P002	Maize	cytosol	89.14	82.64
KRH33847	Soybean	nucleus	81.84	82.14
KRG92948	Soybean	nucleus	81.84	82.14
Os01t0253300-01	Rice	cytosol	79.59	80.8
KRG96743	Soybean	nucleus	79.59	79.89
KRH68461	Soybean	nucleus	79.4	79.7
GSMUA_Achr5P27090_001	Banana	cytosol	80.52	78.9
Os01t0343200-01	Rice	cytosol	67.04	63.48
Os07t0688300-01	Rice	cytosol	43.26	50.0
Os01t0158000-01	Rice	cytosol	26.97	27.27

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	EntrezGene:4337853	EMBL:AB024311	EMBL:AC087551
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ProteinID:BAF16606.1	ProteinID:BAS92358.1
ProteinID:EEE62387.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0048471	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha
EMBL:KF285441	EnsemblPlantsGene:Os05g0155601	EnsemblPlants:Os05t0155601-00	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF35	UniProt:Q0DKL7
UniProt:Q9SLX0	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00000A2296	RefSeq:XP_015639761.1	SEG:seg

Description

Importin alpha-1b subunit. (Os05t0155601-00)

Coordinates

chr5:-:3252035..3255881

Molecular Weight (calculated)

58569.8 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.241

Length

534 amino acids

Sequence
(BLAST)

001: MSLRPSERAE VRRSRYKVAV DADEGRRRRE DNMVEIRKSR REESLLKKRR DGLPAAAAAA AAASPLLAHS SALQQKLEGL PAMVQAVQSD DSAVQLEATT
101: QFRKLLSIER SPPIEEVINT GVVPRFIAFL QREDYPQLQF EAAWALTNIA SGTSDNTKVV VESGAVPIFV KLLSSPSEDV REQAVWALGN VAGDSPKCRD
201: LVLASGGLYP LLQQLNEHAK LSMLRNATWT LSNFCRGKPQ PNFEQVKPAL SALQRLIHSQ DEEVLTDACW ALSYLSDGTN DKIQAVIESG VFPRLVELLM
301: HPSASVLIPA LRTVGNIVTG DDMQTQCVID HQALPCLLNL LTNNHKKSIK KEACWTISNI TAGNREQIQA VINANIIAPL VHLLQTAEFD IKKEAAWAIS
401: NATSGGTHDQ IKYLVAQGCI KPLCDLLVCP DPRIVTVCLE GLENILKVGE AEKNLGAGDV NSYAQMIDDA EGLEKIENLQ SHDNTEIYEK AVKMLESYWL
501: EEEDDAMPSG DNAQNGFNFG NQQPNVPSGG FNFG

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.