Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0253300-01 | Rice | cytosol | 62.59 | 67.11 |
| Os05t0155601-00 | Rice | nucleus | 63.48 | 67.04 |
| VIT_00s0183g00040.t01 | Wine grape | cytosol | 17.2 | 61.39 |
| KXG32452 | Sorghum | cytosol | 36.88 | 54.88 |
| Os07t0688300-01 | Rice | cytosol | 38.48 | 46.97 |
| Bra030771.1-P | Field mustard | cytosol | 32.62 | 42.3 |
| VIT_00s0183g00210.t01 | Wine grape | cytosol | 21.45 | 41.44 |
| Os01t0158000-01 | Rice | cytosol | 24.11 | 25.76 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.3 | EntrezGene:4326488 | EMBL:AK100070 | InterPro:ARM-like | InterPro:ARM-type_fold |
| InterPro:Arm_3 | InterPro:Armadillo | ProteinID:BAD53088.1 | ProteinID:BAF04872.1 | ProteinID:BAS71986.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006606 | GO:GO:0006607 | GO:GO:0006810 | GO:GO:0008139 | GO:GO:0008150 | GO:GO:0008565 |
| GO:GO:0015031 | GO:GO:0061608 | InterPro:IPR000225 | InterPro:IPR002652 | InterPro:IPR011989 | InterPro:Importin-a_IBB |
| InterPro:Importing_su_alpha | EnsemblPlantsGene:Os01g0343200 | EnsemblPlants:Os01t0343200-01 | PFAM:PF00514 | PFAM:PF01749 | PFAM:PF16186 |
| PIRSF:PIRSF005673 | PFscan:PS50176 | PFscan:PS51214 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF35 | UniProt:Q5ZBD1 |
| SMART:SM00185 | SUPFAM:SSF48371 | UniParc:UPI0000446C55 | RefSeq:XP_015621362.1 | : | : |
Description
Similar to Importin alpha-1b subunit. (Os01t0343200-01);AT-IMP (Arabidopsis thaliana importin alpha); protein transporter. (Os01t0343200-02)
Coordinates
chr1:+:13560832..13566870
Molecular Weight (calculated)
62634.7 Da
IEP (calculated)
4.782
GRAVY (calculated)
-0.214
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRPSERMG IRQKGYKASM DAAEGRRRRE DITVILRKAD RDRALKEKRR RPTATAAAEG LPQAAHSSAI EKKLESLPMM VQGLYSDDSS MQLESTTQFR
101: KLLSVDHCPP IDEVIRSGVL PRFVEFLTRE EYPQLQFEAA WALTNIASGT AANTMAVIEH GAVPIFVKLL SSPREDVREQ AVWALGNVAG DSTKCRNLVL
201: MHGAMLPLLQ QLNEHAKLSM LRNSAWTLSN FCRGKPQPDF KHVEPALPVL RELILSQDEE ILTDSCWALS YLSDGSNDNI QAVIETGVCD WLVELLSHPS
301: PVVLIPALRT VGNIVTGDDA QTQCIVGHPQ ALPCLFNLLT TTQKKSVKRE ACWTISNITA GTKEQIQAVI DSNIIAPLLH LLQHAEFDVK KEAVWAISNA
401: TSGGTFNQIE YLVSQGCIKP LCDLLVHQDS KTVLTCLEAL DNILRVGEAK KNLGACNMNI FVPMVDEADG LDKIEDLQNH DNVEIYNKAV YVLESYWVQE
501: DDQQPFLIPS VSESESDNEM FQFGSFGKGK FLFTNGWNCE SESDNEMFQF GSFGEVPDLD GNAP
101: KLLSVDHCPP IDEVIRSGVL PRFVEFLTRE EYPQLQFEAA WALTNIASGT AANTMAVIEH GAVPIFVKLL SSPREDVREQ AVWALGNVAG DSTKCRNLVL
201: MHGAMLPLLQ QLNEHAKLSM LRNSAWTLSN FCRGKPQPDF KHVEPALPVL RELILSQDEE ILTDSCWALS YLSDGSNDNI QAVIETGVCD WLVELLSHPS
301: PVVLIPALRT VGNIVTGDDA QTQCIVGHPQ ALPCLFNLLT TTQKKSVKRE ACWTISNITA GTKEQIQAVI DSNIIAPLLH LLQHAEFDVK KEAVWAISNA
401: TSGGTFNQIE YLVSQGCIKP LCDLLVHQDS KTVLTCLEAL DNILRVGEAK KNLGACNMNI FVPMVDEADG LDKIEDLQNH DNVEIYNKAV YVLESYWVQE
501: DDQQPFLIPS VSESESDNEM FQFGSFGKGK FLFTNGWNCE SESDNEMFQF GSFGEVPDLD GNAP
001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS
Arabidopsis Description
IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.