Factsheet for Os01t0253300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0696000-02
Os02t0180200-01
Os02t0201000-02
Os02t0642200-01
Os03t0111200-01
Os03t0339100-01
Os03t0849600-01
Os04t0386300-01
Os04t0469500-01
Os04t0533300-02
Os09t0106700-01
Os09t0133600-01
Os09t0479800-01
Os10t0503800-01
Os12t0613500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02150.1	Os01t0696000-02	AT1G06510.1	21798944
AT4G02150.1	Os02t0201000-02	AT1G52560.1	21798944
AT4G02150.1	Os09t0106700-01	AT2G23290.1	21798944
AT4G02150.1	Os02t0180200-01	AT2G24020.1	21798944
AT4G02150.1	Os02t0642200-01	AT2G45820.1	21798944
AT4G02150.1	Os03t0111200-01	AT2G45820.1	21798944
AT4G02150.1	Os04t0533300-02	AT2G45820.1	21798944
AT4G02150.1	Os10t0503800-01	AT2G45820.1	21798944
AT4G02150.1	Os04t0386300-01	AT3G48550.1	21798944
AT4G02150.1	Os03t0339100-01	AT4G15900.1	9765207
AT4G02150.1	Os09t0133600-01	AT4G22240.1	21798944
AT4G02150.1	Os03t0849600-01	AT4G24840.1	21798944
AT4G02150.1	Os04t0469500-01	AT5G47810.1	21798944
AT4G02150.1	Os09t0479800-01	AT5G47810.1	21798944
AT4G02150.1	Os12t0613500-01	AT5G57120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G178500.1	Wheat	cytosol	90.11	90.46
TraesCS3A01G172000.1	Wheat	golgi, nucleus	90.11	90.46
KXG32187	Sorghum	cytosol	89.35	89.02
Zm00001d008345_P003	Maize	cytosol	89.54	88.87
Zm00001d040274_P001	Maize	cytosol	89.35	88.85
HORVU3Hr1G034750.5	Barley	cytosol	89.54	88.37
TraesCS3B01G202800.2	Wheat	cytosol	85.93	84.17
VIT_07s0005g01100.t01	Wine grape	cytosol	81.56	81.1
PGSC0003DMT400076860	Potato	cytosol	80.8	80.34
Os05t0155601-00	Rice	nucleus	80.8	79.59
PGSC0003DMT400018802	Potato	cytosol	79.66	79.51
Solyc06g009750.2.1	Tomato	nucleus	79.47	79.32
Solyc08g041890.2.1	Tomato	nucleus	80.8	73.66
AT4G02150.1	Thale cress	cytosol	71.48	70.81
CDY01921	Canola	cytosol	70.72	70.06
CDX97257	Canola	cytosol	70.53	69.87
Bra008559.1-P	Field mustard	cytosol	70.53	69.87
AT1G02690.2	Thale cress	cytosol	71.29	69.57
Bra033342.1-P	Field mustard	cytosol	66.73	67.37
CDX89948	Canola	cytosol	66.54	67.18
CDY64806	Canola	cytosol	65.78	66.8
CDX90948	Canola	cytosol	64.64	65.64
Bra000891.1-P	Field mustard	cytosol	64.45	65.44
Os01t0343200-01	Rice	cytosol	67.11	62.59
Os07t0688300-01	Rice	cytosol	42.78	48.7
CDY15260	Canola	cytosol	66.16	44.9
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	7.22	42.7
Os01t0158000-01	Rice	cytosol	27.95	27.84

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	PDB:2YNS	EntrezGene:4327117	PDB:4B8J
PDB:4B8O	PDB:4B8P	PDB:4BPL	PDB:4BQK	EMBL:AB004660	EMBL:AF005265
EMBL:AK068233	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ProteinID:BAA31166.1
ProteinID:BAA87855.1	ProteinID:BAF04525.1	ProteinID:BAS71366.1	ncoils:Coil	ProteinID:EAZ11274.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565
GO:GO:0009987	GO:GO:0015031	GO:GO:0016032	GO:GO:0048471	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha
EMBL:KC140124	EnsemblPlantsGene:Os01g0253300	EnsemblPlants:Os01t0253300-01	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	UniProt:Q0JP03
UniProt:Q71VM4	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00000ABB23	RefSeq:XP_015621115.1	SEG:seg

Description

IMPORTIN ALPHA 1AImportin alpha-1a subunit. (Os01t0253300-01);Importin alpha-1a subunit. (Os01t0253300-02)

Coordinates

chr1:+:8382115..8387230

Molecular Weight (calculated)

57573.9 Da

IEP (calculated)

4.853

GRAVY (calculated)

-0.179

Length

526 amino acids

Sequence
(BLAST)

001: MSLRPSERVE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSR REESLLKKRR EGLQAQAPVP ASAATGVDKK LESLPAMIGG VYSDDNNLQL EATTQFRKLL
101: SIERSPPIEE VIQSGVVPRF VQFLTREDFP QLQFEAAWAL TNIASGTSEN TKVVIDHGAV PIFVKLLGSS SDDVREQAVW ALGNVAGDSP KCRDLVLANG
201: ALLPLLAQLN EHTKLSMLRN ATWTLSNFCR GKPQPSFEQT RPALPALARL IHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCPRLV ELLLHPSPSV
301: LIPALRTVGN IVTGDDAQTQ CIIDHQALPC LLSLLTQNLK KSIKKEACWT ISNITAGNKD QIQAVINAGI IGPLVNLLQT AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVS EGCIKPLCDL LICPDIRIVT VCLEGLENIL KVGETDKTLA AGDVNVFSQM IDEAEGLEKI ENLQSHDNNE IYEKAVKILE AYWMDEEDDT
501: MGATTVAAPQ GATFDFGQGG GAAQFK

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.