Factsheet for Solyc08g041890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076860	Potato	cytosol	90.47	98.68
Solyc01g060470.2.1	Tomato	extracellular	76.95	83.77
KXG32187	Sorghum	cytosol	74.52	81.44
TraesCS3A01G172000.1	Wheat	golgi, nucleus	73.83	81.3
TraesCS3D01G178500.1	Wheat	cytosol	73.83	81.3
Zm00001d040274_P001	Maize	cytosol	74.35	81.1
Os01t0253300-01	Rice	cytosol	73.66	80.8
Zm00001d008345_P003	Maize	cytosol	74.0	80.57
Solyc06g009750.2.1	Tomato	nucleus	72.96	79.89
HORVU3Hr1G034750.5	Barley	cytosol	73.66	79.74
TraesCS3B01G202800.2	Wheat	cytosol	72.44	77.84
Solyc01g100720.2.1	Tomato	nucleus	68.98	74.53
Solyc10g084270.1.1	Tomato	cytosol	27.21	30.19

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:K4CK49
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc08g041890.2	EnsemblPlants:Solyc08g041890.2.1
UniParc:UPI000276C251	SEG:seg	:	:	:	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4CK49]

Coordinates

chr8:+:25269135..25275101

Molecular Weight (calculated)

63643.2 Da

IEP (calculated)

5.318

GRAVY (calculated)

-0.217

Length

577 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKNK REENLQKKRR EGLQANQQFS VPVQSTVEKK LENLPAMVAG VWTEDGNLQL EATTQFRKLL
101: SIERSPPIEE VIQAGVVPRF VQFLIRDDFP QLQFEAAWAL TNIASGTSEH TKVVIESGAV PIFVKLLSSP SDDVREQAVW ALGNVAGDSP KCRDLVLNCG
201: ALLPLLSQLN PNAKLSMLRN ATWTLSNFCR GKPQPAFDQT KPALPALQQL IHSTDEEVLT DACWALSYLS DGTNDKIQAV IDSGVCPRLV ELLLHPSPSV
301: LIPALRTVGN IVTGDDMQTQ CIIGHQALPC LLNLLSGSHK KSIKKEACWT ISNITAGNRE QIQCVVDAGI IGPLVNLLQN AEFEIKKEAA WAISNATSGG
401: SHEQIKYLVS QGCIKPLCDL LICPDPRIVT VCLEGLENIL KVGEAEKSLG RTSDINLYAQ LIDDAEGLEK IENLQSHDNQ EIYEKAVKIL ETYWLEEDDE
501: TMPPGDAAQQ GFQFGGGEVS VPSGGFNSPG DGSCSICRRK IWVNLRVVKV ARLTFWGMVG SSASENGTWS FHLFQLA

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.