Factsheet for Solyc01g100720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007130	Potato	cytosol	97.38	97.38
VIT_14s0060g00930.t01	Wine grape	cytosol	88.58	88.41
CDX94988	Canola	cytosol	83.33	82.41
CDY31102	Canola	plasma membrane	83.52	82.29
CDX93514	Canola	cytosol	83.33	82.1
Bra018570.1-P	Field mustard	cytosol	83.15	81.92
CDY32165	Canola	cytosol	82.96	81.73
AT1G09270.1	Thale cress	cytosol	82.02	81.41
Solyc01g060470.2.1	Tomato	extracellular	75.66	76.23
Solyc06g009750.2.1	Tomato	nucleus	72.1	73.06
GSMUA_Achr8P22290_001	Banana	cytosol	75.28	72.96
Solyc08g041890.2.1	Tomato	nucleus	74.53	68.98
KRG96699	Soybean	cytosol	53.37	58.88
Bra030765.1-P	Field mustard	cytosol	82.96	58.75
KRH68429	Soybean	cytosol, plastid	55.43	56.7
KRG99893	Soybean	cytosol	46.25	56.39
KRG99898	Soybean	cytosol	45.88	55.56
KRG99895	Soybean	cytosol, plastid	50.37	55.01
KRG99853	Soybean	cytosol, plastid	50.37	55.01
KRG99088	Soybean	cytosol	42.7	51.24
HORVU2Hr1G016300.1	Barley	cytosol	42.32	49.56
KRG96700	Soybean	cytosol	47.0	49.51
Os07t0688300-01	Rice	cytosol	42.7	49.35
TraesCS2D01G096200.1	Wheat	cytosol	47.19	44.68
TraesCS2A01G097100.1	Wheat	cytosol	47.0	44.58
KXG36990	Sorghum	cytosol	46.82	44.41
TraesCS2B01G112400.2	Wheat	cytosol	46.82	44.33
Zm00001d022536_P008	Maize	cytosol	46.25	43.49
Solyc10g084270.1.1	Tomato	cytosol	29.03	29.81

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:K4B1A3
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc01g100720.2	EnsemblPlants:Solyc01g100720.2.1
UniParc:UPI00027676E2	SEG:seg	:	:	:	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4B1A3]

Coordinates

chr1:-:90677517..90686358

Molecular Weight (calculated)

59099.7 Da

IEP (calculated)

5.026

GRAVY (calculated)

-0.284

Length

534 amino acids

Sequence
(BLAST)

001: MSLRPSNRTE VRKKSYKIGV DADEARRRRE DNLVEIRKNK REDNLLKKRR EGLLLHSQQL PDATQTPAAI EKRLESIPIM VQGVWSEDPA AQVEATTHFR
101: KLLSIERSPP IDEVIKAGVI PRFVEFLGRQ DLPQLQFEAA WALTNVASGT SEHTRVVIDH GAVPMFVQLL SSTSDDVREQ AVWALGNVAG DSPSCRDLVL
201: GQGALMPLLA QLNEHSKLSM LRNATWTLSN FCRGKPPTPF EAVRPALPVL QQLIHMNDEE VLTDACWALS YLSDGPNDKI QAVIDAGVCP RLVELLLHPS
301: PTVLIPALRT AGNIVTGDDA QTQFVIDNQV LPCLYQLLTQ NHKKSIKKEA CWTISNITAG NRAQIQAVIE ANIILPLVHL LQNAEFDIKK EAAWAISNAT
401: SGGSNDQIRF LTSQGCIKPL CDLLICPDPR IVTVCLEGLE NILKVGEVDK EAGTNGGINM YTHMIDECDG LDKIENLQTH DNNEIYEKAV KILEKYWAEE
501: DEEQNLPDGA DGNPQGFQFG NNQPNVPAGG FKFG

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.