CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022536_P008	Maize	cytosol	91.65	90.85
Os07t0688300-01	Rice	cytosol	64.12	78.14
HORVU2Hr1G016300.1	Barley	cytosol	61.99	76.54
TraesCS2D01G096200.1	Wheat	cytosol	73.89	73.76
TraesCS2A01G097100.1	Wheat	cytosol	73.36	73.36
TraesCS2B01G112400.2	Wheat	cytosol	73.18	73.05
VIT_14s0060g00930.t01	Wine grape	cytosol	46.18	48.6
AT1G09270.1	Thale cress	cytosol	45.47	47.58
EES19061	Sorghum	cytosol	44.76	47.55
KXG32187	Sorghum	cytosol	44.05	46.97
Solyc01g100720.2.1	Tomato	nucleus	44.41	46.82
PGSC0003DMT400007130	Potato	cytosol	44.41	46.82
Bra018570.1-P	Field mustard	cytosol	44.76	46.49
CDX94988	Canola	cytosol	44.58	46.48
CDX93514	Canola	cytosol	44.58	46.31
CDY31102	Canola	plasma membrane	44.41	46.13
CDY32165	Canola	cytosol	44.05	45.76
KXG32452	Sorghum	cytosol	28.06	41.69
KRG96699	Soybean	cytosol	35.17	40.91
KRG99893	Soybean	cytosol	31.44	40.41
KRG99898	Soybean	cytosol	31.62	40.36
KRH68429	Soybean	cytosol, plastid	36.59	39.46
KRG99853	Soybean	cytosol, plastid	33.93	39.06
KRG99895	Soybean	cytosol, plastid	33.93	39.06
GSMUA_Achr5P27180_001	Banana	cytosol	30.91	37.58
KRG99088	Soybean	cytosol	28.42	35.96
KRG96700	Soybean	cytosol	31.62	35.11
Bra030765.1-P	Field mustard	cytosol	44.41	33.16
EES02429	Sorghum	plastid	23.45	23.36

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	UniProt:A0A1B6QGH0	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606
GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:Importin-a_IBB	InterPro:Importing_su_alpha	EnsemblPlants:KXG36990	ProteinID:KXG36990
ProteinID:KXG36990.1	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176
PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF17	SMART:SM00185	EnsemblPlantsGene:SORBI_3002G423200	SUPFAM:SSF48371
UniParc:UPI00081ADCFB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:77036601..77041054

Molecular Weight (calculated)

61234.1 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.117

Length

563 amino acids

Sequence
(BLAST)

001: MPRAPRRQSG EARRGAYKSR VDFSRSRRRR EDDLLALRRL DRDAGLFKRR RDEPSPAVPA SDPAPVPVEA APPAGITRPI LTPSSPPDVA APRNAAETEL
101: EGLSELVDKL CSDDTTSQLE ATVQFRKLLS DEKNSTVIKI IRADVLPRFA EFLSRHGLPQ LQMEAAWVLT NIAASDYTLL VAECGAVPRL VELLGSPNAN
201: IRHQAIWCLG NIAADLPSCR DILFDHGALT PLLSQFREDM KIPVLRTAMW ALSNLCFGKL PAEVQVKPIL EIISQLIYSA DEKILADACW TVYYICGGKG
301: DAVQDVLDAG VCPQLVNLLM HASANVLLPV ILALARISAG DDKQVEVLVE SGILNCLAQL LARNYPKNIK KQACLIVSNI AAGSKNQIQA VIDADIITPL
401: VVLLRTSETD IKKEAAWAIS NAASSGSSDQ IQYLVSRGCL EPLCSILTYS DPDLVYTCLE GLENILQAGE AGKKGEESGM NPYAEFILEC GGLEKLEDLQ
501: DFDSDRIYEL VMKLLQSYWE EEVGESDDPN IPGSNDSSDT VEAASEDAPQ PPVPPPSGAD EAE

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.