CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008640_P002	Maize	plastid	87.43	93.92
TraesCS3B01G152900.1	Wheat	plastid	81.06	87.4
HORVU3Hr1G025640.2	Barley	plastid	80.71	87.02
Os01t0158000-01	Rice	cytosol	77.88	83.33
TraesCS3D01G135500.2	Wheat	plastid	81.42	81.85
TraesCS3A01G309900.2	Wheat	plastid	81.24	81.67
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	65.49	71.02
VIT_08s0040g02290.t01	Wine grape	cytosol	62.48	68.28
KRH19830	Soybean	cytosol, plastid	61.24	66.92
CDY55698	Canola	cytosol, plastid	59.47	64.62
AT5G03070.1	Thale cress	cytosol, plastid	58.76	63.97
CDY04878	Canola	plastid	58.94	63.92
PGSC0003DMT400027134	Potato	cytosol	58.76	63.85
KRH32422	Soybean	plastid	22.65	63.68
Solyc10g084270.1.1	Tomato	cytosol	58.05	63.08
Bra028852.1-P	Field mustard	cytosol	57.88	62.05
CDX70330	Canola	cytosol, extracellular	27.79	60.15
CDY10407	Canola	cytosol	52.39	59.92
Bra009550.1-P	Field mustard	plastid	29.73	57.53
KXG32187	Sorghum	cytosol	26.73	28.6
EES19061	Sorghum	cytosol	26.19	27.92
KXG36990	Sorghum	cytosol	23.36	23.45
KXG32452	Sorghum	cytosol	14.69	21.9

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	EntrezGene:8059116	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
UniProt:C5XP88	EnsemblPlants:EES02429	ProteinID:EES02429	ProteinID:EES02429.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606
GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	InterPro:IPR000225	InterPro:IPR011989	InterPro:Importing_su_alpha	PFAM:PF00514	PIRSF:PIRSF005673
PANTHER:PTHR23316	PANTHER:PTHR23316:SF1	SMART:SM00185	EnsemblPlantsGene:SORBI_3003G063000	SUPFAM:SSF48371	unigene:Sbi.11559
UniParc:UPI0001A85130	RefSeq:XP_002457309.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:5488420..5494878

Molecular Weight (calculated)

60839.2 Da

IEP (calculated)

7.917

GRAVY (calculated)

-0.143

Length

565 amino acids

Sequence
(BLAST)

001: MPVSVPFAYI TKQPRTRVRE KKNSSRRAQP PRPGPGKMAD GSASASPPSV SPHHQYHRDA IKSSVRNTAA NRRREQALAI GKERREALMR AKRVCRAPLS
101: GSDEAAAEDG DMVTDEGKAD LEARTTQAVE ELKSALSSQG KGAQKRKTEV LRALRRLLSQ SEVPPVDAAI KAGAVPLLVQ YLSFGSSDEQ LLEAAWCLTN
201: IAAGEPEETK SLLPALPLLI AHLGEKSSTL VAEQCAWAIG NVAGEGAELR STLLAQGALW PLARLMLSNK GSTARTAAWA LSNLIKGPDS KAANELIGID
301: GVLNAITRNL EKADEELATE VAWVVVYLSA LSEKATSQIV RSSVPLLLIG RLLASENLQL LIPVLRGLGN LVAGDGYMVD SVLTVGNSVT DQALASLIKC
401: LKSDNRVLKK EASWAMSNVA AGSFEHKKLI FASEATPLLM HLLRTAQFDI RREAAYTLGN LCVVPAGSGN PPNIIVDHLV AIVDGGGLPG FINLVRSADI
501: ESARLGLQFL ELVMRGYPNN QGPKLVERED GIEAMERFQF HENEVMRNMA NGLVDKYFGE DYGLE

Best Arabidopsis Sequence Match ( AT5G03070.1 )
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE

Arabidopsis Description

IMPA9Importin subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:F4KF65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.