CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009550.1-P	Field mustard	plastid	97.32	86.99
CDY10407	Canola	cytosol	92.72	48.99
CDY04878	Canola	plastid	90.04	45.11
CDY55698	Canola	cytosol, plastid	89.66	45.0
AT5G03070.1	Thale cress	cytosol, plastid	88.51	44.51
VIT_08s0040g02290.t01	Wine grape	cytosol	70.5	35.59
KRH19830	Soybean	cytosol, plastid	68.58	34.62
PGSC0003DMT400027134	Potato	cytosol	65.13	32.69
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	64.75	32.44
Solyc10g084270.1.1	Tomato	cytosol	64.37	32.31
Zm00001d008640_P002	Maize	plastid	61.3	30.42
TraesCS3B01G152900.1	Wheat	plastid	60.92	30.34
HORVU3Hr1G025640.2	Barley	plastid	60.54	30.15
Os01t0158000-01	Rice	cytosol	58.24	28.79
TraesCS3D01G135500.2	Wheat	plastid	60.92	28.29
TraesCS3A01G309900.2	Wheat	plastid	60.54	28.11
EES02429	Sorghum	plastid	60.15	27.79
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.64	18.23
CDX93514	Canola	cytosol	30.27	14.58
CDY31102	Canola	plasma membrane	29.89	14.39
CDX94988	Canola	cytosol	29.5	14.26
CDY32165	Canola	cytosol	29.5	14.21
CDY32215	Canola	cytosol	26.82	13.21
CDY09716	Canola	cytosol	26.82	13.08
CDY34430	Canola	cytosol	26.44	13.02
CDX97257	Canola	cytosol	26.05	12.81
CDX90544	Canola	cytosol	26.44	12.78
CDY01921	Canola	cytosol	25.67	12.62
CDX90948	Canola	cytosol	24.9	12.55
CDY22779	Canola	cytosol	25.67	12.55
CDY52043	Canola	cytosol	25.67	12.55
CDX89948	Canola	cytosol	24.52	12.28
CDY64806	Canola	cytosol	24.14	12.16
CDY05194	Canola	cytosol	22.99	11.17
CDY27746	Canola	cytosol	22.99	11.07
CDY05638	Canola	cytosol	21.84	10.69
CDY33917	Canola	cytosol	21.46	10.53
CDY15260	Canola	cytosol	26.44	8.9
KRH32422	Soybean	plastid	1.15	1.49

Protein Annotations

EnsemblPlants:CDX70330	EnsemblPlantsGene:GSBRNA2T00136489001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR23316
PANTHER:PTHR23316:SF1	ProteinID:CDX70330	ProteinID:CDX70330.1	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EF35D6
MapMan:35.1	:	:	:	:	:

Description

BnaA10g26790D

Coordinates

chrLK031790:+:4158067..4159220

Molecular Weight (calculated)

28745.3 Da

IEP (calculated)

4.743

GRAVY (calculated)

0.254

Length

261 amino acids

Sequence
(BLAST)

001: MLLIFGFRDE EIAMEIAWII VYLSALSDIA TSMLLKGGIL QLLVERLASS DSLQLLIPVL RSLGNLVSVD PKAMLTILIG GKNTEESVIG VLAKCLRSEH
101: RVLKKEAAWV LSNIAAGSIE HKRMIHSTEA MPLLIGLLST SPFDIRKEVA YVLGNLCVES AEGDTKPRII QEHLVSIVSG GCLPGFINLV RSPDIEAARL
201: GLQFIELVLR GMPNREGSKI VEGEDGIDAM ERFQFHENEE LRVMANSLVD KYFGEDYGIN E

Best Arabidopsis Sequence Match ( AT5G03070.1 )
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE

Arabidopsis Description

IMPA9Importin subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:F4KF65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.