CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042015_P001	Maize	cytosol	24.31	26.51
KRH50772	Soybean	cytosol, endoplasmic reticulum	49.72	19.87
CDY32165	Canola	cytosol	58.56	19.56
CDY31102	Canola	plasma membrane	58.56	19.56
CDX94988	Canola	cytosol	58.01	19.44
CDX93514	Canola	cytosol	58.01	19.37
VIT_05s0077g01430.t01	Wine grape	cytosol	52.49	17.96
PGSC0003DMT400038784	Potato	cytosol	51.93	17.77
Solyc01g060470.2.1	Tomato	extracellular	51.93	17.74
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	51.38	17.51
KRH11998	Soybean	endoplasmic reticulum	51.38	17.51
KRH02317	Soybean	cytosol	50.83	17.36
CDY22779	Canola	cytosol	50.28	17.04
CDY52043	Canola	cytosol	50.28	17.04
CDY32215	Canola	cytosol	49.72	16.98
CDY34430	Canola	cytosol	49.72	16.98
CDY09716	Canola	cytosol	49.72	16.82
CDX90544	Canola	cytosol	49.72	16.67
CDY01921	Canola	cytosol	45.3	15.44
CDX97257	Canola	cytosol	44.75	15.25
CDX89948	Canola	cytosol	42.54	14.78
CDY33917	Canola	cytosol	41.44	14.1
CDX90948	Canola	cytosol	40.33	14.09
CDY64806	Canola	cytosol	39.78	13.9
CDY05638	Canola	cytosol	40.88	13.88
CDY27746	Canola	cytosol	38.67	12.92
CDY05194	Canola	cytosol	38.12	12.85
CDX70330	Canola	cytosol, extracellular	18.23	12.64
CDY15260	Canola	cytosol	44.2	10.32
CDY10407	Canola	cytosol	19.89	7.29
CDY55698	Canola	cytosol, plastid	19.89	6.92
CDY04878	Canola	plastid	19.34	6.72
Zm00001d040153_P004	Maize	cytosol	3.87	3.83
Zm00001d024033_P002	Maize	plastid	2.76	2.3

Protein Annotations

EnsemblPlants:CDY32170	EnsemblPlantsGene:GSBRNA2T00051548001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR23316
PANTHER:PTHR23316:SF53	PFAM:PF00514	PFscan:PS50176	ProteinID:CDY32170	ProteinID:CDY32170.1	SEG:seg
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EE8800	UniProt:A0A078H0G0	MapMan:35.1	:

Description

BnaCnng06790DBnaCnng06790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0G0]

Coordinates

chrLK032288:+:203528..205186

Molecular Weight (calculated)

20177.7 Da

IEP (calculated)

9.781

GRAVY (calculated)

-0.204

Length

181 amino acids

Sequence
(BLAST)

001: MSNPKRDLTY MMFDIYMFQV KPALPVLRQL IYLNDEEVLT DACWALSYLS DGPNDKIQAV IQAGVCPLLV ELLSHPSPTV LIPALRTVGN IVTGDDSQTL
101: FIIDSGASEV SSFPRMDLMS TPLTTAQIQA NLDRKRAAKA AADRKRAADK KKKDKKFNAA VKECKKNTLY EKTLRMLGIK K

Best Arabidopsis Sequence Match ( AT1G09270.1 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.