CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22779	Canola	cytosol	99.25	99.25
CDY09716	Canola	cytosol	94.19	94.02
CDX90544	Canola	cytosol	94.76	93.7
CDY34430	Canola	cytosol	92.51	93.21
CDY32215	Canola	cytosol	92.51	93.21
AT4G16143.2	Thale cress	cytosol	92.88	92.71
VIT_05s0077g01430.t01	Wine grape	cytosol	84.64	85.44
KRH11998	Soybean	endoplasmic reticulum	83.52	83.99
KRH02317	Soybean	cytosol	83.33	83.96
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	83.33	83.8
KRH50772	Soybean	cytosol, endoplasmic reticulum	70.97	83.66
PGSC0003DMT400038784	Potato	cytosol	82.77	83.55
Solyc01g060470.2.1	Tomato	extracellular	82.77	83.4
CDX94988	Canola	cytosol	74.91	74.07
CDX93514	Canola	cytosol	74.91	73.8
CDY31102	Canola	plasma membrane	74.91	73.8
CDY32165	Canola	cytosol	74.53	73.43
CDY01921	Canola	cytosol	70.79	71.19
CDX97257	Canola	cytosol	70.6	71.0
CDY64806	Canola	cytosol	67.04	69.11
CDX90948	Canola	cytosol	66.48	68.53
CDX89948	Canola	cytosol	65.36	66.99
CDY33917	Canola	cytosol	64.98	65.23
CDY05638	Canola	cytosol	64.98	65.1
Zm00001d042015_P001	Maize	cytosol	19.85	63.86
Zm00001d040153_P004	Maize	cytosol	19.85	57.92
CDY05194	Canola	cytosol	57.87	57.54
CDY27746	Canola	cytosol	58.24	57.38
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.04	50.28
CDY15260	Canola	cytosol	65.36	45.03
Zm00001d024033_P002	Maize	plastid	13.67	33.64
CDY55698	Canola	cytosol, plastid	28.65	29.42
CDY04878	Canola	plastid	28.65	29.37
CDY10407	Canola	cytosol	25.66	27.73
CDX70330	Canola	cytosol, extracellular	12.55	25.67

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078ISM9	UniProt:A0A078ISM9	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDY52043	ProteinID:CDY52043	ProteinID:CDY52043.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00004751001	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514
PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316
PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EE75AE	SEG:seg	:

Description

BnaC08g48070DImportin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A078ISM9]

Coordinates

chrLK033049:+:37531..40876

Molecular Weight (calculated)

58818.0 Da

IEP (calculated)

4.780

GRAVY (calculated)

-0.250

Length

534 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKTK REESLLKKRR EGLQSTQQPQ FAPSSVASAT SVEKKLESLP SMVGGVWSED RNLQLEATTQ
101: FRKLLSIERS PPIEEVIAAG VVPRFVEFLN RDDYPQLQFE AAWALTNIAS GTSEHTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALLPL LSQLNERAKL SMLRNATWTL SNFCRGKPQP PFEQVSPALP ALERLIHSTD EEVLTDACWA LSYLSDGINE KIQSVIQAGV VPRLVELLEH
301: PSPSVLIPAL RTIGNIVTGD DAQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNKDQIQAV CEAGLIFPLV NLLQNAEFDI KKEAAWAVSN
401: ATSGGSPDQI KYMVDQGVVK PLCDLLICPD PRIITVCLEG LENILKVGEA EKLTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DVSAQGFQFG GNDAAAPPGG FNFQ

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.